We developed an engineering educational program for fostering innovative and global engineers. The program is based on multidisciplinary, global, and industry-academia collaborating Project Based Learning (PBL) courses, and has been implemented as part of the Systems Engineering Education at Shibaura Institute of Technology. We define the educational goal of these courses by emphasizing the systems approach with interdisciplinary and cross cultural communication and teamwork skills for solving real issues in the globalizing society. Three PBL courses in the program focus on outcomes which can be achieved by educational environment with diverse students from different engineering and science disciples. The quality assurance of the education program has been achieved by assessing its learning outcomes based on the results of rubrics and a test called Progress Report on Generic Skills in the program.