The genetic diversity and structure of amphidromous populations of ayu
Plecoglossus altivelis altivelis (
n = 383) from eight rivers in Kochi Prefecture were investigated using microsatellite DNA analysis. The levels of genetic diversity in amphidromous populations in Kochi Prefecture showed that allelic richness and expected heterozygosity ranged from 11.4 to 12.4, and from 0.718 to 0.746, respectively. Using pairwise
FST values, we detected significant genetic differentiation between the amphidromous form in Kochi Prefecture and the landlocked form (
n = 43) in Lake Biwa, but no significant differentiation among populations of the amphidromous form in Kochi Prefecture. Amphidromous populations in the eight rivers in Kochi Prefecture were grouped as a genetically single regional unit as estimated from pairwise
FST, principal component analysis, and an unrooted neighbor-joining tree. These results provide important information to assist with management, conservation, and enhancement of the stock in amphidromous populations of ayu in Kochi Prefecture.
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