We evaluated the genome structure and salt stress response of BC
1F
6 lines derived from a cross between an Iranian salt tolerant bread wheat cultivar ‘Roushan’ (2
n=6
x=42, AABBDD) and a synthetic allohexaploid Tritipyrum (2
n=6
x=42, AABBE
bE
b). Sixteen lines (L1 to L16) and their parents were studied for their chromosome composition, K
+ : Na
+ ratio, and relative dry mass (RDM) by growing them in nutrient solution containing 0 (control) or 100 mM NaCl (treatment). Among the studied lines, eight wheat—
Thinopyrum bessarabicum (E
b genome) disomic substitution lines were identified using PCR-based Landmark Unique Gene (PLUG) markers and cytogenetic analysis. Ten (37%) of 27 PLUG markers used were informative for E
b chromosomes 1, 2, 3, 4, and 6 in a wheat background. PLUG markers also revealed that one line, L9, was a disomic substitution line DS2E
b(2B), and that seven lines, L3, L4, L7, L8, L14, L15, and L16, were DS6E
b(6D). There were large differences in morphological traits and salinity tolerance even among DS6E
b(6D) substitutions or untranslocated lines, due perhaps to unidentified rearrangements or small introgressions.
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