The effects of deforestation on carbon balance in a natural tropical peat swamp forest were evaluated by micrometeorological monitoring. The monitoring sites were the primary forest at To-Daeng and the secondary forest at Bacho in Narathiwat Province, Thailand. The concentration gradient method (CG) and the relaxed eddy accumulation method (REA) were used to estimate the CO
2 flux above the canopies. We estimated the annual amount of carbon absorption for both sites, using the relationship between CO
2 flux and solar radiation for each site. An annual net carbon absorption of 5.32t C ha
-1 year
-1, was estimated for the primary forest. The accumulation of the released organic matter from the forest into logged-water caused the net carbon absorption in the peat swamp forest. In the secondary forest, annual net carbon absorption was estimated at 5.22 t C ha
-1 year
-1, which is almost the same range of absorption as the primary forest, because of plant growth in the secondary forest. A greater quantity of net carbon absorption, 9.69t C ha
-1 year
-1, was expected, assuming that the ground surface remained water-logged throughout the year. On the other hand, assuming it remained dry throughout the year, a net carbon emission of -0.40 t C ha
-1 year
-1, was expected.
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