A 54-m-long lacustrine sediment core was taken from the Late Pleistocene Takano Formation, Nagano City, Japan, in 2004. The cored sediment consists mainly of homogenous clayey silt associated with many tephra beds, and its major part is the object of this study, covering from 140 to 40 ka in age. The variability of diatom productivity was reconstructed by chemical compositions. The SiO
2/Al
2O
3 ratio shows a correlation with biogenic silica content measured in a part of the same cored sediment. This fact indicates that the SiO
2/Al
2O
3 ratio can be regarded as a proxy for past diatom productivity. The profile of the SiO
2/Al
2O
3 ratio shows a greater similarity to that of pollen-based temperature than to that of pollen-based humidity. This fact implies that the diatom productivity has been mainly controlled by temperature change in this region. When the lake water overturns, stored nutrients in hypolimnion are transported to the photic zone, and support high diatom productivity in general. Thus, the air temperature might control surface water temperature, and subsequently afect the strength and duration of thermal stratification in the lake. This phenomenon must be controlled by a precession cycle, because spectral analysis of the temporal change in the SiO
2/Al
2O
3 ratio revealed a dominant frequency of 20.3 kyr. The period of high diatom productivity often delays a temperature rise ; however, this fact may reflect the accumulation time of nutrients from soil produced by temperature rise. Nutrient supply must depend not only on temperature but also on rainfall, because rivers transport nutrients from the soil. In the case of the Takano basin with its small catchment, diatom productivity appears to be influenced by temperature as a more critical factor than rainfall.
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