Journal of Chemical Software
Online ISSN : 1883-8359
Print ISSN : 0918-0761
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Volume 5 , Issue 2
Showing 1-4 articles out of 4 articles from the selected issue
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  • Takatoshi MATSUMOTO, Umpei NAGASHIMA, Kazutoshi TANABE, Kimiko HASHIMO ...
    Volume 5 (1999) Issue 2 Pages 49-54
    Released: March 28, 2000
    JOURNALS FREE ACCESS
    We report an easy computational procedure for qualitative prediction of hydrogen-deuterium exchange position in hydroxyindole derivatives. The efficiency of the procedure was confirmed with experimental results (Fig. 1). Hydrogen-deuterium exchange took place at the carbon atom having the big charge (Fig. 3), namely, that next to the hydroxy function. The predicted positions were in good agreement with the observations though there is an exception when steric hindrance should be considered to explain the results.Atomic charges in basic molecule skeleton obtained by using the molecular orbital calculation enable prediction for the position of hydrogen-deuterium exchange in hydroxy indole derivatives.
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  • Amih SAGAN, Umpei NAGASHIMA, Yoshihito MORI
    Volume 5 (1999) Issue 2 Pages 55-64
    Released: March 28, 2000
    JOURNALS FREE ACCESS
    We propose a simple computational algorithm to solve non-linear equations with multiple roots of two variables: F(x,y)=0. The algorithm is effective only where the relationship between two variables x and y is monotonous and continuous (for example, see Fig.s 1 and 3). The algorithm also gives a guideline of automatic adjustment of the notch width in the Euler method. The efficiency of the algorithm was demonstrated by analyzing two typical examples and an autocatalytic reaction in open systems.
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  • Hiroshi IRITANI
    Volume 5 (1999) Issue 2 Pages 65-80
    Released: March 28, 2000
    JOURNALS FREE ACCESS
    The number of structural isomers of alkanes was combinatorially enumerated by counting the different structures composed of several alkyl groups attached to the center of the molecule specifically defined. This algorithm is rather slow when compared with the conventional graph theoretical method. The correctness of the algorithm was checked by reproducing isomer numbers up to 40 carbon atoms.
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  • Tadashi ENDO, Takahiro IIDA, Nobuhide FURUYA, Yumiko YAMADA, Masato M. ...
    Volume 5 (1999) Issue 2 Pages 81-92
    Released: March 28, 2000
    JOURNALS FREE ACCESS
    Enthalpies of benzene—monosubstituted benzene interactions were evaluated by semi-empirical MO calculations of heats of formation for (i) the benzene (PhH) dimer and (ii) benzene—monosubstituted benzene (PhX) pairs. Calculation methods, initial intermolecular distances (rI), and so on were investigated for the benzene dimer. The interaction enthalpy and optimized geometry calculated with PM3 were consistent with the previous experimental and theoretical results. As initial arrangements of PhH—PhX systems, one parallel (P) and four vertical arrangements (Vr , Vp , Vm , and Vb) were chosen (Figure 1). In the case of Vp or Vm arrangement where the lowest H atom at the para or meta position to substituent X in PhX was located above the centroid of PhH, calculated enthalpies of the interactions (ΔΔHf) between PhH and PhX had close correlation with experimental ones (ΔΔHt) determined by gas-liquid partition chromatography (GLPC), with the correlation coefficient (ρ) as large as 0.94 (Figure 5); differences between the experimental ΔΔHt values and the ΔΔHt values calculated from the correlation equation were less than ca. 0.1 kcal mol-1 . With the other arrangements except for Vp, no appreciable relationship was observed between the ΔΔHf and ΔΔHt (Figures 2, 3, and 4).
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