Activation of tumor suppressor genes is frequently associated with cytogenetic loss in specific chromosomal loci. The chromosomal segment 6q15-23 is deleted in 4-20% of acute lymphoblastic leukemias and in non-Hodgkin's lymphomas, and may harbor a relevant tumor suppressor gene(s) involved in development of these lymphoid malignancies. Because this segment has also been reported to undergo deletions in a wide variety of nonhematological tumors including breast cancer, prostatic cancer, malignant melanoma, and pancreatic cancer, inactivation of the putative tumor suppressor(s) may also be committed to genesis of multiple tumor types.
In this study, we analyzed 388 samples of hematopoietic tumors for deletions within a long arm of chromosome 6 by fluorescent
in situ hybridization (FISH) method in order to define a minimum overlapping deletion. Forty nine different PAC/BAC clones were derived from known STS markers in 6q and used as probes for FISH analysis. Deletions were distributed over the region defined by D6S284 and WI4227, spanning from 6q15 to 6q23. Although the frequency of deletions was highest in the locus defined by D6S1563 and D6S1543, regions of isolated, non-overlapping deletions were also identified. These results indicate that multiple tumor suppressor loci may exist in the long arm of chromosome 6, and give a basis for future attempts to isolate tumor suppressor genes in this relevant region.
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