X-ray Structure Analysis Online
Online ISSN : 1883-3578
ISSN-L : 1883-3578
Volume 34
Displaying 1-24 of 24 articles from this issue
Part 1
  • Kosuke YOSHIDA, Ryoji MITSUHASHI, Masahiro MIKURIYA, Hiroshi SAKIYAMA
    2018 Volume 34 Pages 1-2
    Published: January 10, 2018
    Released on J-STAGE: January 10, 2018
    JOURNAL FREE ACCESS
    Supplementary material

    A mononuclear iron(III) complex [FeCl(dmso)5](BPh4)2 [chloridopentakis(dimethylsulfoxide-κO)iron(III) bis(tetraphenylborate)] was synthesized, and characterized by a single-crystal X-ray method. The compound crystallized in the monoclinic space group P21/n and Z = 2 with cell parameters a = 10.4961(16)Å, b = 14.260(2)Å, c = 19.166(3)Å, β = 94.512(2)°, V = 2859.8(7)Å3. The R1 [I > 2σ(I)] and wR2 (all data) values were 0.1149 and 0.2930, respectively, for all 6552 independent reflections. The analysis revealed an octahedral geometry with ClO5 donor set.

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  • Kanji KUBO, Taisuke MATSUMOTO, Haruko TAKECHI
    2018 Volume 34 Pages 3-4
    Published: January 10, 2018
    Released on J-STAGE: January 10, 2018
    JOURNAL FREE ACCESS
    Supplementary material

    The structure of 7-(diethylamino)-3-(2-oxazolyl)coumarin (1) was determined by X-ray crystallography. It crystallizes in the space group C2/c (#15) with cell parameters a = 19.168(5)Å, b = 13.233(3)Å, c = 13.141(3)Å, β = 121.6625(9)°, Z = 8, and V = 2837.1(12)Å3. The R1 (I > 2σ(I )) and wR2 (all data) values are 0.0603 and 0.1797, respectively. The coumarin ring of 1 makes an angle of 26.6(1)° with the oxazole ring. Intermolecular C–H···O, C–H···N, C–H···π, and π···π interactions were observed in the crystal lattice.

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Part 2
  • Ankit RAINA, Vinutha V. SALIAN, B. NARAYANA, B. K. SAROJINI, Rajni KAN ...
    2018 Volume 34 Pages 5-6
    Published: February 10, 2018
    Released on J-STAGE: February 10, 2018
    JOURNAL FREE ACCESS
    Supplementary material

    The title compound, (2E)-1-(anthracen-9-yl)-3-(3-nitrophenyl)prop-2-en-1-one, C23H15N1O3, crystallizes in the orthorhombic space group Pn21a with the following unit-cell parameters: a = 6.9988(7), b = 11.4808(11), c = 21.7608(17)Å, Z = 4. The crystal structure was elucidated by direct methods, and refined to a final R-value of 0.0420 for 1683 observed reflections. In the title molecule, the dihedral angle between the anthracene ring and the phenyl ring is 67.7(4)°. The nitro group makes a dihedral angle of 18.4(3)° with the benzene ring. The C=C double bond of the propenone unit exhibits a trans conformation. In the crystal, molecules are linked by C–H···O hydrogen bonds, generating a three-dimensional network. The crystal structure also features weak π-π interactions [centroid-centroid separation = 3.7277 Å].

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  • Mari TOYAMA, Takumi ISONO, Atsushi ICHIYAMA, Kenji CHAYAMA
    2018 Volume 34 Pages 7-8
    Published: February 10, 2018
    Released on J-STAGE: February 10, 2018
    JOURNAL FREE ACCESS
    Supplementary material

    The crystal structure of the title compound, 9-aza-3,6,12,15-tetrathiaheptadecane hydrochloride (N-H-ATH·HCl), was determined by X-ray crystallography. The crystal structure revealed that the substitution from an S atom in a polythioether to an NH group to form a monoazapolythioether does not have any influence on the structural features of acyclic polythioethers. The compound crystallized in an orthorhombic system, and was characterized as: P212121, a = 4.84742(17), b = 10.3753(3), c = 36.4017(18)Å, Z = 4, V = 1830.77(12)Å3. The R1 and wR2 values were 0.0706 and 0.1959, respectively, for 2929 reflections.

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Part 3
  • Takuya SAWADA, Haruo AKASHI
    2018 Volume 34 Pages 9-10
    Published: March 10, 2018
    Released on J-STAGE: March 10, 2018
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    Supplementary material

    The title compound, bis-tetrahydrofuranate-{(5,10,15,20-(tetrakispentafluorophenyl)porphyrinato)magnesium(II)} ([Mg(THF)2(TFPP)]), crystallized in the monoclinic space group C2/c with the following unit-cell parameters: a = 23.940(6)Å, b = 12.007(4)Å, c = 23.882(6)Å, β = 90.795(4)°, V = 6864(3)Å3 and Z = 4. The crystal structure was solved by direct methods, and refined by full-matrix least-squares procedures to a final R-value of 0.0604 for 4933 observed reflections. A porphyrin ligand coordinated to the magneseum atom, and four pentafluorophenyl groups bonded to the meso position of the porphyrin skeleton.

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  • Ryoji MITSUHASHI, Yusuke MIYAZAKI, Satoshi HOSOYA, Masahiro MIKURIYA
    2018 Volume 34 Pages 11-12
    Published: March 10, 2018
    Released on J-STAGE: March 10, 2018
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    Supplementary material

    The crystal structure of Cu(II) complex with 2-(2-imidazolinyl)phenolate was determined by X-ray crystallography. The title compound was synthesized by a reaction of Cu(NO3)2·3H2O and 2-(2-imidazolinyl)phenolate in methanol. The compound crystallized in the monoclinic space group P21/c and Z = 2 with cell parameters a = 9.2964(9)Å, b = 10.4722(10)Å, c = 8.8271(9)Å, β = 112.0280(10)°, V = 796.62(14)Å3. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0306 and 0.0844, respectively, for all 1943 independent reflections. In the crystal, a 2D sheet structure was formed by intermolecular hydrogen-bonds between the coordinating phenolate-O atom and a noncoordinating N–H bond.

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Part 4
  • S. NAGARAJU, M. A. SRIDHAR, N. R. SREENATHA, C. S. PRADEEPA KUMARA, M. ...
    2018 Volume 34 Pages 13-14
    Published: April 10, 2018
    Released on J-STAGE: April 10, 2018
    JOURNAL FREE ACCESS
    Supplementary material

    This paper reports on a newly synthesized compound (4-fluorophenyl)(2-(methylthio)thiophen-3-yl)methanone) which is crystallized into a monoclinic system with the space group of P21; the cell parameters are a = 5.4232(4)Å, b = 14.1405(6), c = 7.5318(4)Å, β = 94.198(5)° and Z = 2. The structure is solved by a direct method and refined by full-matrix least squares on F2 reduced to R1 = 0.0337, wR2 = 0.0806. Also, the crystal structure, molecules are stabilized by short C–H···O and C–H···F contacts.

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  • Jean GUILLON, Alexandra DASSONVILLE-KLIMPT, Stéphane MOREAU, Pierre LA ...
    2018 Volume 34 Pages 15-16
    Published: April 10, 2018
    Released on J-STAGE: April 10, 2018
    JOURNAL FREE ACCESS
    Supplementary material

    The X-ray crystal structure of 2,8-bis(trifluoromethyl)-4-vinylquinoline, a key intermediate in the synthesis of potent antimalarial agents, has been established. It crystallizes in the monoclinic space group P21/c with cell parameters a = 16.678(2)Å, b = 17.492(7)Å, c = 8.286(4)Å, β = 97.50(2), V = 2396.5(16)Å3 and Z = 4. The crystal structure was refined to final values of R1 = 0.1043 and wR2 = 0.2207. An X-ray crystal structure analysis revealed that each molecule features intermolecular C–H···F hydrogen bonds and halogen halogen-type I interactions.

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Part 5
  • Sevgi KANSIZ, Sükriye ÇAKMAK, Necmi DEGE, Güngör MERAL, Halil KÜTÜK
    2018 Volume 34 Pages 17-18
    Published: April 10, 2018
    Released on J-STAGE: May 10, 2018
    JOURNAL FREE ACCESS
    Supplementary material

    The structure of 3-acetoxy-2-methyl-N-(4-nitrophenyl)benzamide was determined by X-ray crystallography. The compound crystallized in a monoclinic system and it was characterized in the space group P21/c with cell parameters a = 5.8658(3), b = 17.1661(10), c = 15.1938(7)Å, β = 103.182(4)°, Z = 4, V = 1489.60(14)Å3. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.046 and 0.093, respectively, for all 2932 independent reflections. Intramolecular C3–H3···O3 and intermolecular N2–H2···O1, C5–H5···O1 interactions were observed in the crystal lattice.

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  • Masahiro MIKURIYA, Koji KUSUNOKI, Takanori KOTERA, Daisuke YOSHIOKA, S ...
    2018 Volume 34 Pages 19-21
    Published: April 10, 2018
    Released on J-STAGE: May 10, 2018
    JOURNAL FREE ACCESS
    Supplementary material

    A μ-O-μ-MoVIO4-bridged dinuclear oxidomolybdenum(V) complex with 2-(3-aminopropyl)aminoethanethiol (Hapaet), [Mo3O7(apaet)2]·2CH3OH, was prepared. The crystal structure was determined by the single-crystal X-ray diffraction method at 293 K. It crystallizes in the monoclinic space group P21/n with a = 16.558(3)Å, b = 8.9725(13)Å, c = 17.193(3)Å, β = 90.192(2)°, V = 2554.3(7)Å3, Dx = 1.899 g/cm3, and Z = 4. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0331 and 0.0768, respectively, for all 6166 independent reflections. The two molybdenum atoms are bridged by an oxido-O atom and MoO42− in a distorted octahedral geometry with oxido-O and meridional NNS-donor atoms of apaet. A relativistic DV-Xα calculation supported the MoV2MoVI mixed-valent state.

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Part 6
  • N. R. SREENATHA, B. N. LAKSHMINARAYANA, D. P. GANESHA, S. VIJAYSHANKAR ...
    2018 Volume 34 Pages 23-24
    Published: June 10, 2018
    Released on J-STAGE: June 10, 2018
    JOURNAL FREE ACCESS
    Supplementary material

    The title compound, (E)-1-(2-hydroxyphenyl)-3-(5-methylthiophen-2-yl)prop-2-en-1-one, is crystallized into a monoclinic crystal class with cell parameters a = 8.2530(5)Å, b = 13.1530(14)Å, c = 14.1570(11)Å, β = 125.579(6)° and space group of P21/c. The structure is solved by a direct method, and it is refined to R = 0.048. The structure exhibits short C–H···O interactions. Hirshfeld surface computation studies shows that H···H, C···H and O···H are major contributions.

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  • Katsura MOCHIZUKI
    2018 Volume 34 Pages 25-26
    Published: June 10, 2018
    Released on J-STAGE: June 10, 2018
    JOURNAL FREE ACCESS
    Supplementary material

    A new pentanuclear complex containing four nickel(II) ions and a sodium ion, [Na{Ni2(L)(O2CMe)2(μ-O2CMe)}2]BPh4 (1), was prepared using a binuleating ligand, N,N′-bis[2-(N,N-dimethyl)aminoethyl]-N,N′-dimethyl-1,3-diamino-2-hydroxypropane (HL). The crystal structure of 1 was determined by single-crystal X-ray crystallography. The compound crystallized in the triclinic space group P1 and Z = 2 with cell parameters a = 10.841(3)Å, b = 19.161(5)Å, c = 20.415(5)Å, α = 116.929(18)°, β = 92.970(19)°, γ = 101.485(13)°, V = 3655.7(19)Å3. The R1 [I > 2σ(I)] and wR2 (all data) values were 0.0464 and 0.1207, respectively, for 16641 independent reflections. Four of the oxygen donors in the coordinated bidentate acetato ligands further coordinated to one sodium ion in a tetrahedral manner.

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Part 7
  • Kanji KUBO, Daiki KURIBAYASHI, Masahiro ISOBE, Taisuke MATSUMOTO, Akir ...
    2018 Volume 34 Pages 27-28
    Published: July 10, 2018
    Released on J-STAGE: July 10, 2018
    JOURNAL FREE ACCESS
    Supplementary material

    5-[4-(Dodecyloxy)benzoyloxy]-2-(hexadecanoyloxy)tropone (1) exhibits an enantiotropic smectic A phase. The structure of 1 was determined by X-ray crystallography. It crystallizes in the space group P1 (#2) with cell parameters a = 5.400(2)Å, b = 9.659(4)Å, c = 37.485(16)Å, α = 92.51(2)°, β = 90.915(17)°, γ = 91.484(15)°, Z = 2, and V = 1952.5(14)Å3. The R1(I > 2σ(I)) and wR2 (all data) values are 0.1059 and 0.2152, respectively. The molecular length of 1 is 46.26(2)Å and each paraffin chain has an all-trans conformation. The molecules form a layer structurex via intermolecular C–H···O and C-H···π interactions.

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  • Yuki SUEMITSU, Ko YONEDA, Yasunori YAMADA, Masayuki KOIKAWA
    2018 Volume 34 Pages 29-30
    Published: July 10, 2018
    Released on J-STAGE: July 10, 2018
    JOURNAL FREE ACCESS
    Supplementary material

    An asymmetric dinuclear Mn(III) complex, [Mn2(L1-H)2(OBz)Cl(H2O)]·CH3CN [H2L1-H = N-(2-oxymethylphenyl)salicylideneimine], was synthesized and characterized by single-crystal X-ray analysis. The compound crystallizes in the triclinic space group P1 with a = 10.9807(15), b = 12.3290(17), c = 14.492(2)Å, α = 80.004(10), β = 74.181(8), γ = 64.614(7)°, V = 1701.8(4)Å3, Dcalcd = 1.514 g/cm3, Z = 2. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0376 and 0.0999, respectively, for all 5382 independent reflections. The complex has a bis-μ-alkoxo bridged dinuclear structure with a syn-syn bridged benzoate as an axial ligand. Magnetic measurements of 1 indicate that a weak antiferromagnetic interaction is operative in the dimanganese core with J value of –12.6 cm−1.

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Part 8
  • Maisara Abdul KADIR, M. Sukeri M. YUSOF, C. J. SUMBY
    2018 Volume 34 Pages 31-32
    Published: August 10, 2018
    Released on J-STAGE: August 10, 2018
    JOURNAL FREE ACCESS
    Supplementary material

    Compound 1, namely 1,2-bis[N,N′-6-(3-pyridylmethylamido)pyridyl-2-carboxyamido]ethane, crystallizes in the space group C2/c, with cell parameters a = 13.669(6)Å, b = 17.763(7)Å, c = 11.013(4)Å, β = 108.857(16), Z = 4, and V = 2530.5(17)Å3. The asymmetric unit comprises half of the title compound with the compound adopting a U-shaped conformation stabilized by intramolecular hydrogen bonding. Crystal packing is governed by N–H···N and C–H···O hydrogen bonds. The structure has been solved and refined to reach R and wR indices for all data of 0.0514 and 0.1366, respectively.

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  • Masahiro MIKURIYA, Ai SHIBUTANI, Hitomi YAMADA, Daisuke YOSHIOKA
    2018 Volume 34 Pages 33-35
    Published: August 10, 2018
    Released on J-STAGE: August 10, 2018
    JOURNAL FREE ACCESS
    Supplementary material

    A μ-phenolato-μ-azido-bridged dinuclear zinc(II) complex with 2,6-bis(N-(4-imidazolylethyl)iminomethyl)-4-methylphenol (Hbimmp), [Zn2(bimmp)(μ-N3)(N3)(Cl)], was synthesized. The crystal structure was determined by a single-crystal X-ray diffraction method at 293 K. The complex crystallizes in the monoclinic space group P21/c with a = 9.2278(10), b = 26.069(3), c = 10.0068(11)Å, β = 93.261(2)°, V = 2403.4(4)Å3, Dx = 1.657 g/cm3, Z = 4. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0342 and 0.0892, respectively, for all 5717 independent reflections. The two zinc(II) atoms are bridged by a phenolato-oxygen of bimmp and a μ-azido-nitrogen atom, where each zinc(II) atom is further coordinated by imino- and imidazolyl-nitrogen atoms of bimmp and azido-nitrogen and chlorido atoms with half occupation to form a square-pyramidal or trigonal-bipyramidal geometry.

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Part 9
Part 10
  • Masahiro MIKURIYA, Yuya SATO, Daisuke YOSHIOKA
    2018 Volume 34 Pages 45-47
    Published: October 10, 2018
    Released on J-STAGE: October 10, 2018
    JOURNAL FREE ACCESS
    Supplementary material

    The μ-phenolato-μ-acetato-bridged dinuclear copper(II) complex with 2-(5-chloro-2-hydroxyphenyl)-1,3-bis(2-(5-chloro-2-hydroxybenzylideneamino)ethyl)imidazolidine (H3L), [Cu2(L)(μ-CH3CO2)], was synthesized. The crystal structure was determined by the single-crystal X-ray diffraction method at 293 K. The complex crystallized as [Cu2(L)(μ-CH3CO2)]·CH3CN·H2O in the monoclinic space group P21/c with a = 9.088(6), b = 13.296(9), c = 29.20(2)Å, β = 95.131(13)°, V = 3514(4)Å3, Dcalcd = 1.520 g/cm3, Z = 4. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0512 and 0.1282, respectively, for all 8308 independent reflections. The two copper(II) atoms are bridged by phenolato-oxygen of L3− and μ-acetato, where each copper(II) atom is further coordinated by phenolato-oxygen, imino- and imidazolidine-nitrogen atoms of L3− in a meridional fashion to form a square-pyramidal geometry. The temperature dependence of the magnetic susceptibilities showed a ferromagnetic interaction with J = +4.3 cm−1 between the two copper(II) atoms.

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  • Satoshi KANEKO, Ryoji MITSUHASHI, Masahiro MIKURIYA, Hiroshi SAKIYAMA
    2018 Volume 34 Pages 49-50
    Published: October 10, 2018
    Released on J-STAGE: October 10, 2018
    JOURNAL FREE ACCESS
    Supplementary material

    A mononuclear iron(III) complex, [FeCl2(phen)2][PF6]·MeCN [dichloridobis(1,10-phenanthroline-κ2N,N′)iron(III) hexafluoridophosphate–acetonitrile], was synthesized, and characterized by single-crystal X-ray method. The compound crystallized in the monoclinic space group C2/c and Z = 4 with cell parameters a = 16.3586(12)Å, b = 12.6022(9)Å, c = 13.0231(9)Å, β = 103.6760(10)°, V = 2608.7(3)Å3. The R1 [I > 2σ(I)] and wR2 (all data) values were 0.0345 and 0.0949, respectively, for all 3161 independent reflections. Analysis revealed that the complex cation has an octahedral coordination geometry with a Cl2N4 donor set with two chloride ligands at the cis-positions.

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Part 11
  • Masahiro MIKURIYA, Yuya SATO, Daisuke YOSHIOKA
    2018 Volume 34 Pages 51-53
    Published: November 10, 2018
    Released on J-STAGE: November 10, 2018
    JOURNAL FREE ACCESS
    Supplementary material

    A μ-phenolato-μ-benzoato-bridged dinuclear copper(II) complex with 2-(5-chloro-2-hydroxyphenyl)-1,3-bis(2-(5-chloro-2-hydroxybenzylideneamino)ethyl)imidazolidine (H3LCl) was synthesized. The crystal structure was determined by the single-crystal X-ray diffraction method at 90 K. The complex crystallizes as [Cu2(LCl)(μ-C6H5CO2)]·H2O in the monoclinic space group C2/c with a = 26.016(7), b = 15.634(4), c = 18.360(5)Å, β = 109.073(3)°, V = 7057(3)Å3, Dx = 1.553 g/cm3, Z = 8. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0543 and 0.1396, respectively, for all 8488 independent reflections. The two copper(II) atoms are bridged by the phenolato-oxygen of LCl3− and a monatomic-bridging benzoato ligand, where each copper(II) atom is further coordinated by a phenolato-oxygen, imino- and imidazolidine-nitrogen atoms of LCl3− in a meridional fashion to form a square-pyramidal geometry. The temperature dependence of the magnetic susceptibilities showed a ferromagnetic interaction with J = +22.8 cm−1 between the two copper(II) atoms.

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  • Aleksandra REDZICKA, Lukasz SZCZUKOWSKI, Andrzej KOCHEL
    2018 Volume 34 Pages 55-56
    Published: November 10, 2018
    Released on J-STAGE: November 10, 2018
    JOURNAL FREE ACCESS
    Supplementary material

    The structure of 4,6-dimethyl-5-(3-chlorophenyl)-2-{[4-(3,4-dichlorophenyl)-1-piperazinyl]methyl}-pyrrolo[3,4-c]pyrrole-1,3(2H,5H)-dione (1) was determine by X-ray crystallography. The compound crystallized in a monoclinic crystal system and was characterized thus: C2/c, a = 27.741(3), b = 9.890(2), c = 17.904(3)Å, β = 103.47(2)°, Z = 8, V = 4777.0(14)Å3. The crystal structure was solved by direct methods and refined by full-matrix least-squares on F2 to final values of R1 = 0.0665 (I > 2σ(I)) and wR2 = 0.1820 (all data).

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Part 12
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