Most quantitative trait locus (QTL) detection studies in pigs have been done in experimental F2 populations, by crossing 2 genetically different breeds, and some strong candidate genes have been detected. However, segregation of QTLs must be confirmed within purebred populations directly, because the possibility exists that no genetic variation in purebred populations would be observed. In Japan, many local public animal experiment stations have performed selection experiments in closed-line breeding for several generations using estimated breeding value. Segregation of QTLs affecting selection traits might have occurred in these populations. Therefore, we carried out a whole genome QTL analysis for selection and correlation traits such as meat production, meat quality, and carcass traits in a Duroc purebred population. This population had been selected for 7 generations on the basis of breeding values for a daily gain, loin eye muscle area, backfat thickness, and intramuscular fat content. In this study, many significant QTLs for selection and correlation traits were detected in this population. In particular, we found highly significant QTLs for fat accumulation traits and fatty acid composition, for which fine mapping analysis were performed. The SNPs of the leptin receptor (
LEPR) gene and the stearoyl-CoA (delta-9-desaturase) (
SCD) gene, which are located on significant QTLs, have strong effects on fat accumulation traits and fatty acid composition, respectively. These results imply that QTL analysis by using a closed pig line breeding population is effective for detecting QTLs within a purebred population. Moreover, this study provides useful information for successful implementation of marker-assisted selection in a purebred population.
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