Genome Informatics

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Volume 9

Displaying 51-100 of 110 articles from this issue

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An Educational Tool for Visualize DNA Structures in vivo

Shigehiro Fukase, Masato Wayama

1998 Volume 9 Pages 276-277
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.276

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Extended Sequence Alignment Method for Protein Secondary Structure Prediction

Susumu Hiraoka

1998 Volume 9 Pages 278-279
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.278

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Detection of Frame-Shift Error in the Yeast Genome Sequences

Naoko Kasahara, Naoyuki Harada, Keiichi Nagai

1998 Volume 9 Pages 280-281
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.280

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Clustering and Detection of 5' Splice Sites of mRNA by k Weight Matrix Model

Katsuhiko Murakami, Toshihisa Takagi

1998 Volume 9 Pages 282-283
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.282

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Automated Metabolic Reconstruction at the Molecular Level

Masanori Arita

1998 Volume 9 Pages 284-285
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.284

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Correlation between Exons and Dispersed Repetitive DNA Distribution on the Human Genome

Yoshiaki Hojo, Ikuo Uchiyama, Yataro Daigo, Yusuke Nakamura, Toshihisa ...

1998 Volume 9 Pages 286-287
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.286

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Automatic Construction of Biological Abbreviation Dictionary from Abstracts of Biomedical Papers

Mikio Yoshida, Kenichiro Fukuda, Toshihisa Takagi

1998 Volume 9 Pages 288-289
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.288

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A Workbench for Systematic Construction of Signal Transduction Pathways

Ontologies and Architectures

Kenichiro Fukuda, Mikio Yoshida, Toshihisa Takagi

1998 Volume 9 Pages 290-291
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.290

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Development Information Extraction Tool

Toward Construction of Protein-Protein Interaction Database

Tomoko Okazaki(Ohta), Toshihisa Takagi

1998 Volume 9 Pages 292-293
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.292

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Palindrome Analysis: Distribution of Complete-Matched Inverted Repeats with a Moderate Length Spacer

Masao Fukagawa, Tatsuhiko Tsunoda, Tosihisa Takagi

1998 Volume 9 Pages 294-295
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.294

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Construction of Ortholog/Paralog Group Table for PTS

Takeaki Taniguchi, Minoru Kanehisa

1998 Volume 9 Pages 296-297
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.296

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A Library of Protein-Ligand Interaction Sites for de novo Ligand Design

Kiminobu Sato, Minoru Kanehisa

1998 Volume 9 Pages 298-299
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.298

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Automatic Detection of Gene Clusters by P-Quasi Complete Linkage Grouping

Wataru Fujibuchi, Hiroyuki Ogata, Hideo Matsuda, Minoru Kanehisa

1998 Volume 9 Pages 300-301
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.300

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The Construction of the Knowledge Base of Immune System

Yoshinobu Igarashi, Minoru Kanehisa

1998 Volume 9 Pages 302-303
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.302

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Detection of Co-regulated Genes by Comparative Analysis of Microbial Genomes

Hiroyuki Ogata, Wataru Fujibuchi, Minoru Kanehisa

1998 Volume 9 Pages 304-305
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.304

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Extracting Regulatory Signals from the Upstream Region of Co-expressed Genes Derived from DNA Microarray Experiments

Shuichi Kawashima, Hiroyuki Ogata, Minoru Kanehisa

1998 Volume 9 Pages 306-307
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.306

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Protein Folding Simulation and Self-Consistent Potential Functions

Fumi Takazawa, Masaki Sasai, Minoru Kanehisa

1998 Volume 9 Pages 308-309
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.308

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Systematic Classification of B. subtilis Genes and Construction of a Knowledge Base to Represent Functional Information

Atsushi Ogiwara

1998 Volume 9 Pages 310-311
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.310

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Search Pathways for Secondary Metabolites Based on Genome Analysis and Chemical Knowledge on Metabolism

Takaaki Nishioka, Kimito Funatsu

1998 Volume 9 Pages 312-313
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.312

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A Method for Querying Complete Genomes by Viewing Them as Structured Documents

Aaron J. Stokes, Hideo Matsuda, Akihiro Hashimoto

1998 Volume 9 Pages 314-315
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.314

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Maintenance of Transcription Factor DataBase TFDB by TFDB Maintenance System

Masako Kaizawa, Satoru Watanabe, Takahiro Nobukuni, Masami Horikoshi, ...

1998 Volume 9 Pages 316-318
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.316

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ALIS: Data Management Systems for Human Genome Sequencing

Mika Hirakawa, Kensaku Imai, Hiroko Yamaguchi, Junko Shimada, Kazuo Ta ...

1998 Volume 9 Pages 319-320
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.319

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Automatic cDNA Classification System for Mouse Genome Project

Yoshifumi Fukunishi, Hideaki Konno, Yoshihide Hayashizaki

1998 Volume 9 Pages 321-323
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.321

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Automated cDNA Information System for Large Scale cDNA Project

Hideaki Konno, Yuichi Sugahara, Yoshifumi Fukunishi, Kazuhiro Shibata, ...

1998 Volume 9 Pages 324-325
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.324

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Application of the RLGS Image Analysis Tool (RAT) to the Construction of a Genetic Linkage Map of Recombinant Inbred Strain SMXA

Yuichi Sugahara, Yoshihide Hayashizaki

1998 Volume 9 Pages 326-327
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.326

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3DinSight: An Integrated Database and Search Tool for Structure, Function and Property of Biomolecules

Jianghong An, Takao Nakama, Yasushi Kubota, Akinori Sarai

1998 Volume 9 Pages 328-329
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.328

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ProTherm: Thermodynamic Database for Proteins and Mutants

M. Michael Gromiha, Jianghong An, Hidetoshi Kono, Motohisa Oobatake, H ...

1998 Volume 9 Pages 330-331
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.330

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Prediction of DNA Target Sites by Regulatory Proteins Based on Structure-Derived Potential

Hidetoshi Kono, Akinori Sarai

1998 Volume 9 Pages 332-333
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.332

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Genomic Hypothesis Creator

A Multi-Strategic View Creator for Sequences

Osamu Maruyama, Tomoyuki Uchida, Takayoshi Shoudai, Satoru Miyano

1998 Volume 9 Pages 334-335
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.334

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Development of Web Interface of Image Analysis System DDGEL for 2D Gel Electrophoresis

Kyotetsu Kanaya, Akira Ohyama, Tatsuya Akutsu, Asao Fujiyama

1998 Volume 9 Pages 336-337
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.336

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Subcubic Time Algorithms for RNA Secondary Structure Prediction

Tatsuya Akutsu

1998 Volume 9 Pages 338-339
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.338

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ThreeTree: A New Method to Reconstruct Phylogenetic Trees

Satoshi Oota

1998 Volume 9 Pages 340-341
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.340

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Efficiency of Model-Based Complexity Method for Estimating Unrooted Multifurcate Phylogenetic Tree

Fengrong Ren, Hiroshi Tanaka

1998 Volume 9 Pages 342-343
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.342

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Secondary Structure Prediction Based on Statistical Mechanics

Yukio Kobayashi, Nobuhiko Saitô

1998 Volume 9 Pages 344-346
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.344

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Integrating Multiple Evidences by Hidden Markov Models

Kiyoshi Asai, Katunobu Itou, Tetsushi Yada

1998 Volume 9 Pages 347-348
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.347

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Modeling Transcriptional Units of E. coli Genes Using HMM

Tetsushi Yada, Mitsuteru Nakao, Yasushi Totoki, Takahiro Ishii, Kenta ...

1998 Volume 9 Pages 349-350
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.349

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A Database of B. subtilis Promoters and Transcription Factors

Takahiro Ishii, Kenta Nakai

1998 Volume 9 Pages 351-352
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.351

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A Study Using Sequence Comparison to Investigate the Molecular Evolution of Mitochondrial tRNA Genes

Jun-Ichi Sagara, Shugo Nakamura, Mitsunori Ikeguchi, Kentaro Shimizu

1998 Volume 9 Pages 353-354
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.353

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Prediction of Initiation Codons in cDNA Fragments Using Statistical Information and Similarity with Protein Sequences

Tetsuo Nishikawa, Toshio Ota, Takao Isogai

1998 Volume 9 Pages 355-356
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.355

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Genome Analysis: Assigning Protein Coding Regions to 3D Structures

Asaf A. Salamov, Makiko Suwa, Christine A. Orengo, Mark B. Swindells

1998 Volume 9 Pages 357-358
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.357

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A Novel Application of GeneMark-RC to the Analysis of Prokaryotic Genomes and Human cDNAs

Sequence Data with Statistical Deviations Are Rich in Important Biological Information

Makoto Hirosawa, Osamu Ohara, Katsumi Isono

1998 Volume 9 Pages 359-360
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.359

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Annotation and Presentation Systems for Arabidopsis Genome Sequencing Project at Kazusa DNA Research Institute

Yasukazu Nakamura, Shusei Sato, Satoshi Tabata

1998 Volume 9 Pages 361-362
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.361

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Charge Distribution of Signal Peptides and Signal Anchor Type II

Masahiro Gomi, Takatsugu Hirokawa, Shigeki Mitaku

1998 Volume 9 Pages 363-364
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.363

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Topology Prediction of Membrane Proteins Based on a Modified “Positive-Inside” Rule

Koji Kadota, Hiroyuki Sasamoto, Takatsugu Hirokawa

1998 Volume 9 Pages 365-366
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.365

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Classification of Membrane Proteins by Types of Transmembrane Helices Using SOSUI System

Shigeki Mitaku, Takatsugu Hirokawa, Mitsuo Ono

1998 Volume 9 Pages 367-368
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.367

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Gene Classification by Self-Organization Mapping of Codon Usage in Bacteria with Completely Sequenced Genome

Shigehiko Kanaya, Yoshihiro Kudo, Takashi Abe, Takanori Okazaki, Carlo ...

1998 Volume 9 Pages 369-371
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.369

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GAFLEX: A Hybrid GA Engine for Mapping the Configuration Hyper-Space of Organic Compounds in Solution

Carlos A. Del Carpio

1998 Volume 9 Pages 372-373
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.372

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DYNAX: A New System for Biomolecular Dynamics Simulation in Solution

Atsushi Yoshimori, Carlos A. Del Carpio

1998 Volume 9 Pages 374-375
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.374

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Development of an Antibacterial MAP Homologous to a Loop Region in Human Lactoferrin

Masachika Azuma, Taiki Kojima, Masaki Kobayashi, Carlos Adriel Del Car ...

1998 Volume 9 Pages 376-377
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.376

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MOLDEX: A Computer System for Drug Design. 4) A Combined Electro-Geometric Method for the Identification of Pharmacophoric Structural Patterns in Drugs

Hiromi Nakatake, Carlos Adriel Del Carpio

1998 Volume 9 Pages 378-379
Published: 1998
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.9.378

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