Host: Division of Chemical Information and Computer Science, The Chemical Society of Japan
Co-host: The Pharmaceutical Society of Japan, Japan Society for Bioscience, Biotechnology, and Agrochemistry, The Japan Society for Analytical Chemistry, Society of Computer Chemistry, Japan, Graduate School of Pharmaceutical Sciences, Osaka University, Japanese Society for Information and Systems in Education (Approaval)
Pages JP11
We have developed a quantum chemical calculation system for proteins based on the density functional method program ProteinDF. This system is composed of five subsystems: "Automatic computations", "Geometry optimization and ab initio MD calculation (Quantum dynamics)", "Calculations on very large-sized proteins", "Database of protein wavefunctions", and "Integrated environment, ProteinEditor". In this study, we will report the development of ProteinEditor subsystem. In all-electron calculations on proteins, the data size is huge and the simulation becomes complex. Therefore, an interactive and easy control by the user is indispensable. To reduce these problems, ProteinEditor contains a graphical user interface to support the all-electron semi-automatic calculation method for proteins (QCLO method). The high-performance molecular graphics and the structural interaction representation functions can assist the safe quantum chemical calculation. We also implemented the functions of hydrogen addition, the amino acid substitution (point mutation) and checking the structural validity of proteins in PDB format. This work will guarantee the easy and safe achievement of quantum chemical simulation of proteins.