Proceedings of the Symposium on Chemoinformatics
38th Symposium on Chemoinformatics, Tokyo
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Poster Session
Random matrix theory of rigidity in protein
*Masanori Yamanaka
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CONFERENCE PROCEEDINGS FREE ACCESS

Pages 94-95

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Abstract
We study rigidity of soft matter by analyzing the time series data from molecular dynamics simulation using the random matrix theory. We construct the time-dependent variance-covariance matrix and analyze the eigensystem. As an example, we present a result for a protein lysozyme, PDBID:1AKI. We find that there are three different time scales involved in the coupling formation of correlated sectors of atoms and two different time scales for the size of the correlated sectors. These five time scales coexist simultaneously.
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