Genome Informatics
Online ISSN : 2185-842X
Print ISSN : 0919-9454
ISSN-L : 0919-9454
Toward Integration of Systems Biology Formalism
The Gene Regulatory Networks Case
Raffaella Gentilini
Author information
JOURNAL FREE ACCESS

2005 Volume 16 Issue 2 Pages 215-224

Details
Abstract
We consider the problem of integrating different systems biology formalisms, namely, the process calculi based formalism, the modeling approach based on systems of differential equations, and the one relying on automata-like descriptions (and model checking).
Specifically, we define automatic procedures for translating stochastic π-calculus descriptions of gene regulatory networks to S-systems differential equations. Tools for extracting and reasoning on (approximate) solutions of S-systems have been recently developed in the literature, and can be exploited to establish a link with automata-based systems biology and model checking techniques.
Content from these authors
© Japanese Society for Bioinformatics
Previous article Next article
feedback
Top