Japanese Journal of Lactic Acid Bacteria
Online ISSN : 2186-5833
Print ISSN : 1343-327X
ISSN-L : 1343-327X
Review
Methods for analyzing next-generation sequencing data I. Introduction
Koji KadotaJianqiang SunMin TangTasuku NishiokaKentaro Shimizu
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Keywords: NGS, RNA-seq, Bioinformatics, R, Linux
JOURNAL FREE ACCESS

2014 Volume 25 Issue 2 Pages 87-94

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Abstract
Next-generation sequencing (NGS) technology is a fundamental means of studying genome, transcriptome, and microbiome. We can analyze NGS data of bacteria such as Lactobacillus using laptop computer nowadays. However, for many non-bioinformaticians, it is difficult to construct an environment for analyzing NGS data. In this review, we describe educational programs, websites, application softwares, programming languages, and webtools. An example of genome analysis of Lactobacillus casei 12A is also provided.
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© 2014 Japan Society for Lactic Acid Bacteria
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