Journal of the Mass Spectrometry Society of Japan
Online ISSN : 1880-4225
Print ISSN : 1340-8097
ISSN-L : 1340-8097
INTEGRATED PAPER
A Fundamental Aspect of The Structure and Fragmentations of Organic Ions in Mass Spectrometry
Protonation of Organic Compounds and The Behavior of Resulting Protonated Molecules
Hisao NAKATA
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2000 Volume 48 Issue 2 Pages 79-93

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Abstract
Protonation of organic compounds and fragmentations of resulting protonated molecules are reviewed. In chemical ionization (CI) mass spectrometry, the amount of protonation and the extent of bond cleavages of typical functional groups are evaluated by using appropriate test compounds. A new parameter, protonation susceptibility (PS), is introduced, which is not directly related to the ordinary proton affinity (PA) of organic compounds. CI mass spectra of a series of compounds are quantitatively analyzed, and prediction of an unknown spectrum is shown to be successful. The principal modes of bond cleavages in even-electron ions are also formulated. These results are compared to the protonation in fast atom bombardment (FAB) and electrospray ionization (ESI) mass spectra, where the protonation takes place in condensed phase-like environment and in solution, respectively.
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© 2000 by The Mass Spectrometry Society of Japan
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