Genome Informatics

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Volume 11

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Recent Developments of ProTherm

Thermodynamic Database for Proteins and Mutants

M. Michael Gromiha, Jianghong An, Hidetoshi Kono, Motohisa Oobatake, H ...

2000 Volume 11 Pages 384-385
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.384

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ProNIT: Thermodynamic Database for Protein-Nucleic Acid Interactions

P. Prabakaran, Jianghong An, M. Michael Gromiha, S. Selvaraj, Hatsuho ...

2000 Volume 11 Pages 386-387
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.386

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AngioDB: Angiogenesis Database

Tae-Kwon Sohn, Eun-Joung Moon, Seok-Ki Lee, Hwan-Gue Cho, Kyu-Won Kim

2000 Volume 11 Pages 388-389
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.388

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Application of Digital Signal Processing in Clinical Database Management

Pawan Kumar Dhar, S. Vikram, U.C. Niranjan

2000 Volume 11 Pages 390-391
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.390

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Pharmacoinformatics Infrastructure for Genome Based Personalized Medicine

Kotoko Nakata, Tatsuya Nakano, Takako Takai(Igarashi), Tsuguchika Kami ...

2000 Volume 11 Pages 392-393
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.392

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Computational Design of Proteinous Drug Employing Hidden Markov Model

Taizo Hanai, Hideki Noguchi, Yukari Matsubara, Kazuya Takeda, Hiroyuki ...

2000 Volume 11 Pages 394-395
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.394

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Predicting Protein Binding Site Presence/Absence in SNP-Related Alleles by Accounting Gel Mobility Shift Assay

Julia Ponomarenko, Tatyana Merkulova, Gennady Vasilievl, Zoya Levashov ...

2000 Volume 11 Pages 396-398
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.396

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DNA Properties Specific for Protein/DNA Free Energy Changes Caused by Single Nucleotide Substitutions

Mikhail Ponomarenko, Julia Ponomarenko, Galina Orloval, Anatoly Frolov ...

2000 Volume 11 Pages 399-401
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.399

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Comparison of Affected-Sib-Pair Statistics for Multi-Locus Genetic Disease Models in Multi-Marker Analysis

Osamu Ogasawara, Toshihisa Takagi

2000 Volume 11 Pages 402-403
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.402

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Standardized Phylogenetic Tree

Toshinori Endo, Soichi Ogishima, Hiroshi Tanaka

2000 Volume 11 Pages 404-405
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.404

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Phylogenetic Analysis of Mammalian P-Glycoprotein Sequences

Maria Rochelle A. Diswe, Pocholo Joseph R. Capule, Karlo Marco C. Clet ...

2000 Volume 11 Pages 406-407
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.406

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A Sequential-Linking Method for Analysis of Within-Host Viral Evolution

Fengrong Ren, Soichi Ogishima, Hiroshi Tanaka

2000 Volume 11 Pages 408-409
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.408

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Gene Discovery of G-Protein Coupled Receptors from Human Genome

Makiko Suwa, Toshiyuki Sato, Ikuo Okouchi, Masamitsu Mikoshiba, Yutaka ...

2000 Volume 11 Pages 410-411
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.410

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Polarity Difference Score

A New Measure for Recognition and Classification of Transmembrane Protein Structures

Makiko Suwa, Henrik T. Yudate, Yasuhiko Masuho, Shigeki Mitaku

2000 Volume 11 Pages 412-413
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.412

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SOSUIsignal: Software System for Prediction of Signal Peptide and Membrane Protein

Masahiro Gomi, Fumitsugu Akazawa, Shigeki Mitaku

2000 Volume 11 Pages 414-415
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.414

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Novel Index of Polar Amino Acids Characterizing End Region of Transmembrane Helices

Toshiyuki Hayashibe, Takatsugu Hirokawa, Shigeki Mitaku

2000 Volume 11 Pages 416-417
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.416

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Prediction of Dumbbell-Type Soluble Proteins and Their Center Helices

Shun-ya Takahashi, Shigeki Mitaku

2000 Volume 11 Pages 418-419
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.418

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Sequence Analysis of Less Hydrophobic Transmembrane Segments in Polytopic Membrane Proteins

Hiromitsu Araki, Toshihisa Takagi, Kenta Nakai

2000 Volume 11 Pages 420-421
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.420

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Transmembrane Topology Pattern and Detection of Transmembrane Protein Functions

Natalia Poluliakh, Kohei Saito, Toshio Shimizu

2000 Volume 11 Pages 422-423
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.422

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A Transmembrane Topology Prediction Method Based on Integration Mechanism

Hanako Ito, Demelo Madrazo Lao, Toshio Shimizu

2000 Volume 11 Pages 424-425
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.424

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Evaluation of Transmembrane Topology Prediction Methods by Using an Experimentally Characterized Topology Dataset

Masami Ikeda, Masafumi Arai, Toshio Shimizu

2000 Volume 11 Pages 426-427
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.426

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Comparison of Geometries and Properties of Protein Molecular Surface for Structure-Based Function Prediction

Kengo Kinoshita, Jun'ichi Furui, Haruki Nakamura

2000 Volume 11 Pages 428-429
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.428

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A Method of Protein Molecular Surface Comparison Based on Geometric Hashing

Keiichirou Matsuura, Norimasa Shoji, Takenao Okawa, Haruki Nakamura

2000 Volume 11 Pages 430-431
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.430

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Design of an Apoptosis-Inducing Short Peptide Using the System for Macromolecular Interaction Assessment MIAX

Taiki Kojima, Atsushi Yoshimori, Akemi Hayakawa, Seiichi Tanuma, Carlo ...

2000 Volume 11 Pages 432-433
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.432

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MIAX: A System for Assessment of Macromolecular Interaction. 4) Interaction Site Inference by Molecular Hydrophobic and Electrostatic Analysis

Atsushi Yoshimori, Carlos A. Del Carpio

2000 Volume 11 Pages 434-435
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.434

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A QSAR Study for Modeling MHC Class-I Binding Oligo-Peptides

Simonetta Fickel, Carlos A. Del Carpio

2000 Volume 11 Pages 436-437
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.436

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Automatic Collection of Functional Sequence Based on Annotations in the GenBank Entry

Yoshifumi Okada, Tomomasa Nagashima

2000 Volume 11 Pages 438-439
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.438

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SIGNAL-ONTOLOGY: Ontology for Cell Signaling

Takako Takai(Igarashi), Toshihisa Takagi

2000 Volume 11 Pages 440-441
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.440

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Toward Automatic Construction of Extensional Ontology from Genome Databases

Takuya Yagyuu, Kenji Satou

2000 Volume 11 Pages 442-443
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.442

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Toward Automatic Recognition of Field Description Syntax and Parser Generation for Genome Databases

Takeo Sakai, Kenji Satou

2000 Volume 11 Pages 444-445
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.444

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Use of a Full Parser for Information Extraction in Molecular Biology Domain

Akane Yakushiji, Yuka Tateisi, Yusuke Miyao, Jun'ichi Tsujii

2000 Volume 11 Pages 446-447
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.446

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The GENIA Project

Knowledge Acquisition from Biology Texts

Nigel Collier, Hideki Mima, San Zoo Lee, Tomoko Ohta, Yuka Tateisi, Ak ...

2000 Volume 11 Pages 448-449
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.448

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Evaluation of Automatic Term Recognition of Nuclear Receptors from MEDLINE

Sophia Ananiadou, Sylvie Albert, Dietrich Schuhmann

2000 Volume 11 Pages 450-451
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.450

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Automatic Construction of Search Condition for Making an Exhaustive List of Similar Papers

Jianghong An, Takao Nakama, Ponraj Prabakaran, Akinori Sarai

2000 Volume 11 Pages 452-453
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.452

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Computer Simulation of Glycolysis in Pancreatic β-Cells Using the E-CELL System

Yasuhiro Naito, Hiromu Nakajima, Masaru Tomita

2000 Volume 11 Pages 454-455
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.454

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Quantitative Modeling of Mitochondrial Energy Metabolism Using E-CELL Simulation Environment

Katsuyuki Yugi, Masaru Tomita

2000 Volume 11 Pages 456-457
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.456

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Computer Modeling of Photosynthesis Using the E-CELL System

Emily Wang, Yoichi Nakayama, Masaru Tomita

2000 Volume 11 Pages 458-459
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.458

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Computer Simulation of Enzyme Deficiency in Human Erythrocyte Using the E-Cell System

Yoichi Nakayama, Ayako Kinoshita, Masaru Tomita

2000 Volume 11 Pages 460-461
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.460

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A Cellular Automata System with Reconfigurable Hardware

Towards a Whole Cell Simulation

Tomoyoshi Kobori, Tsutomu Maruyama, Koshiki Yamaguchi, Akihiko Konagay ...

2000 Volume 11 Pages 462-463
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.462

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A Security System for Human Genome Information Encoded by Chemicals, Not by Electronic Codes

Yumi Kawazoe, Toshikazu Shiba, Masahito Yamamoto, Azuma Ohuchi

2000 Volume 11 Pages 464-465
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.464

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DNA Solution of the Shortest Path Problem by Concentration Control

Masahito Yamamoto, Nobuo Matsuura, Toshikazu Shiba, Azuma Ohuchi

2000 Volume 11 Pages 466-467
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.466

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Preface

A. Keith Dunker, Akihiko Konagaya

2000 Volume 11 Pages v
Published: 2000
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.11.v

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