Genome Informatics

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Volume 12

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Analysis of the Maternal mRNAs Encoding DNA-Binding Motifs in the Ascidian Egg Using SSDB

Shuichi Kawashima, Takeshi Kawashima, Akihiro Nakaya, Kazuhiro W. Maka ...

2001Volume 12 Pages 386-387
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.386

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“Melina”-Novel Tool for Elucidation of Consensus Motif in the Promoter Regions of Functionally Related DNA Sequences

Natalia Poluliakh, Michiko Konno, Toshihisa Takagi, Kenta Nakai

2001Volume 12 Pages 388-389
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.388

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Identification and Phylogenetic Analysis of Schizophrenia Associated Retrovirus (SZRV) Element in the Human GenBank Database

Jun-Seop Kim, Sang-Bae Kim, In Song Koh

2001Volume 12 Pages 390-391
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.390

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The Origin and Evolution of Eukaryotic Protein Kinases

Asako Koike, Kenta Nakai, Toshihisa Takagi

2001Volume 12 Pages 392-393
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.392

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Evolution of the MIR Elements Located in Coding Regions of Human Genome

Maria Chaley, Eugene Korotkov, Nicolai Kudryashov

2001Volume 12 Pages 394-395
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.394

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Comparison between Linear Chromosomes in Terms of Duplicate Genes: Implication of Whole Genome Duplication in Yeast

Satoshi Fukuchi, Ken Nishikawa, Katsuhisa Horimoto

2001Volume 12 Pages 396-397
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.396

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Relation between Restriction Modification Genes and Genome Rearrangements Suggested from Genome Sequence Comparison within Genus Neisseria

Keiichirou Nakao, Akito Chinen, Ayaka Nobusato, Youhei Fujitani, Ikuo ...

2001Volume 12 Pages 398-399
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.398

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Analysis of Dictyostelium discoideum cDNA Obtained from Multicellular and Unicellular Stages

Masumi Itoh, Yoshinori K. Okuji, Susumu Goto, Hideko Urushihara, Minek ...

2001Volume 12 Pages 400-401
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.400

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Maintenance of Microbial Genome Architecture

Kentaro Mori, Katsuhisa Horimoto, Satoshi Fukuchi, Ken Nishikawa

2001Volume 12 Pages 402-403
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.402

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Comparative Analysis on the Conservation of Two Orthologous Genome Regions

Taehyung Kim, Kyeyoung Cho, Hojin Jung, In Song Koh, Jong H. Park

2001Volume 12 Pages 404-405
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.404

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Development of a Novel Functional Gene Discovery System by Hybrid-Ribozyme Libraries in the Post Genome Era

Hiroaki Kawasaki, Eigo Suyama, Reiko Onuki, Kazunari Taira

2001Volume 12 Pages 406-408
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.406

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ParalogCluster: Classifying Paralogs in a Genome into Paralogous Groups

Kiyoshi Yamazaki, Makoto Ohnishi, Ken Kurokawa, Teruo Yasunaga

2001Volume 12 Pages 409-410
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.409

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Toward Chromosome-Level Comparative Analysis of Vertebrate Genomes

Katsuhiko Murakami, Hideki Noguchi, Yasushi Totoki, Tetsushi Yada, Ats ...

2001Volume 12 Pages 411-412
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.411

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Symbolical Kernel-Based Reasoning: Its Application to the Rule Extraction in Dictyostelium discoideum DNA

Moritoshi Yasunaga, Kentaro Ushiyama, Ikuo Yoshihara, Jung Hwan Kim

2001Volume 12 Pages 413-414
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.413

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Distribution Analysis of 5' Splice Site-Like Sequences in Human and Mouse pre-mRNAs

Sumie Kitamura(Abe), Nobuyuki Takahashi, Atsushi Sakurai, Takanori Was ...

2001Volume 12 Pages 415-416
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.415

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Guide of Putative Alternative Splicing Database

Jiunn-Jei Lai, Yen-hua Huang, Yu-Tin Chen, Ueng-Cheng Yang

2001Volume 12 Pages 417-419
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.417

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Feature Extraction from Genome Sequence Using Multi-Modal Neural Network

Ikuo Yoshihara, Yoshiyuki Kamimai, Moritoshi Yasunaga

2001Volume 12 Pages 420-422
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.420

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Dataset Construction for Gene Structure Prediction and Alternative Splicing Analysis

Masahiko Mizuno, Hideki Nagasaki, Makiko Suwa

2001Volume 12 Pages 423-424
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.423

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An Automated System for Finding Seven Transmembrane Helix Receptors from Human Genome

Makiko Suwa, Toshiyuki Sato, Ikuo Okouchi, Masanori Arita, Shinichi Ma ...

2001Volume 12 Pages 425-426
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.425

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Prediction of Co-Regulated Genes in Prokaryotic Genomes on the Basis of Upstream Elements Conserved Across Closely Related Species

Yuko Makita, Goro Terai, Shigeki Mitaku, Toshihisa Takagi, Kenta Nakai

2001Volume 12 Pages 427-428
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.427

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Prediction of Co-Regulated Genes in Bacillus subtilis Based on the Conserved Upstream Elements across Three Closely Related Species

Goro Terai, Toshihisa Takagi, Kenta Nakai

2001Volume 12 Pages 429-430
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.429

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Detection of tRNA Genes with Introns from DNA Sequences of Archaea

Makoto Kinouchi, Yoshihiro Kudo

2001Volume 12 Pages 431-432
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.431

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Skew of Mononucleotide Frequencies, Relative Abundance of Dinucleotides, and DNA Strand Asymmetry

Chiharu Shioiri, Naoyuki Takahata

2001Volume 12 Pages 433-434
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.433

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Statistical Analysis of Genomic Information: Various Periodicities in DNA Sequence

Atsushi Fukushima, Makoto Kinouchi, Yoshihiro Kudo, Shigehiko Kanaya, ...

2001Volume 12 Pages 435-436
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.435

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Latent Periodicity of Many Genes

Eugene Korotkov, Nikolay Kudryaschov

2001Volume 12 Pages 437-439
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.437

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Nonparametric Linkage Analysis for Complex Genetic Diseases with Linked Loci

Osamu Ogasawara, Toshihisa Takagi

2001Volume 12 Pages 440-441
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.440

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Adapting in Vitro Selected oligoDNAs for Recognition of Natural Sites and for Analysis of SNPs and Mutagenesis

Galina V. Orlova, Julia V. Ponomarenko, Anatoly S. Frolov, Mikhail P. ...

2001Volume 12 Pages 442-444
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.442

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Lorenz Curves and Statistical Distribution Functions on Frequency Repetition

Eugene Korotkov, Nikolay Kudryaschov, Tagir Valiullin

2001Volume 12 Pages 445-446
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.445

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Revealing mRNA Translational Signals By Primary and Secondary Structure Analyses

Igor Titov, Alex Kochetov, Nikolay Kolchanov, Akinori Sarai

2001Volume 12 Pages 447-448
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.447

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Comparison of Methods for Probe Design

Noriyuki Hosaka, Ken-ichi Kurata

2001Volume 12 Pages 449-450
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.449

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Efficient Numerical Optimization Technique Based on Real-Coded Genetic Algorithm

Takanori Ueda, Nobuto Koga, Masahiro Okamoto

2001Volume 12 Pages 451-453
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.451

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More Speed and More Pattern Variations for Knowledge Discovery System BONSAI

Hideo Bannai, Keisuke Iida, Ayumi Shinohara, Masayuki Takeda, Satoru M ...

2001Volume 12 Pages 454-455
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.454

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Two-Layered Genetic Network Drawings with Minimum Edge Crossings

Atsuko Yamaguchi, Hiroyuki Toh

2001Volume 12 Pages 456-457
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.456

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Visualization for Comparison between Gene Clusters Generated from Different Sources

Shuichi Tsutsumi, Makoto Kano, Yutaka Midorikawa, Michitaka Hirose, Hi ...

2001Volume 12 Pages 458-459
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.458

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ReView: A Viewer to Display the Relation of Protein-Coding Region and Repetitive Patterns

Yu-Tin Chen, Yu-Chung Chang, Yen-Hua Huang, Ueng-Cheng Yang

2001Volume 12 Pages 460-461
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.460

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3-D Visualization for Gene Rearrangement in Ternary Comparison

Naobumi Sasaki, Naoki Sato

2001Volume 12 Pages 462-463
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.462

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XPAK: A Visualization Toolkit for Transcriptome Analysis

Yasushi Masuda, Shigehiko Kanaya, Hirotada Mori

2001Volume 12 Pages 464-465
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.464

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gLdraw: A General Tool for a Comparison of Chromosome Maps

Yousuke Hayakawa, Kanako Koyanagi, Takuro Tamura, Takashi Gojobori, Ta ...

2001Volume 12 Pages 466-468
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.466

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Ontology Based Corpus Annotation and Tools

Tomoko Ohta, Yuka Tateisi, Jin-Dong Kim, Hideki Mima, Jun'ichi Tsujii

2001Volume 12 Pages 469-470
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.469

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Graphical Representation of Gene Ontology in Scalable Vector Graphics

Junko Tanoue, Noboru Matoba, Masatoshi Yoshikawa, Shunsuke Uemura

2001Volume 12 Pages 471-472
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.471

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A System for Integration of Heterogeneous Biological XML Data

Noboru Matoba, Junko Tanoue, Masatoshi Yoshikawa, Shunsuke Uemura

2001Volume 12 Pages 473-474
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.473

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Toward an Ontological Classification and Mapping of Bioinformatics Fields

Tae-Hyung Kim, Gil-Mi Ryu, In Song Koh, Jong Park

2001Volume 12 Pages 475-477
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.475

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Bio-GilJabee: An Ontological Source Dictionary for Bioinformatics

Myungguen Chung, Kiho Park, In Song Koh, Jong Park

2001Volume 12 Pages 478-479
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.478

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An Integrated Bioinformatic Search Server: Sequences, Structure, Interaction, and Function of Proteins (SSIF) Server

Jae-Hyung Lee, In Song Koh, Jong Park

2001Volume 12 Pages 480-481
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.480

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Drug to SNP: A Pharmacogenomics Database for Linking Drug Response to SNPs

Ju-Youn Lee, In Song Koh

2001Volume 12 Pages 482-483
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.482

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A Secondary Database for Journal Search Based on Experimental Materials and Methods in Alzheimer's Disease Research

Younghee Lee, Bumjin Kim, In Song Koh

2001Volume 12 Pages 484-485
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.484

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Database for Human UV-Regulated Genes

Makoto Yamazaki, Hiroko Ao, Goro Terai, Nobuo Kitamura, Toshihisa Taka ...

2001Volume 12 Pages 486-487
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.486

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DBTSS: DataBase of Human Transcriptional Start Sites and Full-Length cDNA

Riu Yamashita, Yutaka Suzuki, Sumio Sugano, Kenta Nakai

2001Volume 12 Pages 488-489
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.488

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Current Status of ProTherm: Thermodynamic Database for Proteins and Mutants

M. Michael Gromiha, Hatsuho Uedaira, Jianghong An, Samuel Selvaraj, Po ...

2001Volume 12 Pages 490-491
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.490

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Database on mRNA-Located Eukaryotic Expression Signals Influencing Translation Efficiency and Specificity

Alex V. Kochetov, Dmitri Grogorovich, Nikolay A. Kolchanov, Akinori Sa ...

2001Volume 12 Pages 492-493
Published: 2001
Released on J-STAGE: July 11, 2011

DOIhttps://doi.org/10.11234/gi1990.12.492

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