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Primers

Methodologies and Applications of Spatial Transcriptomics: A Novel Approach Integrating Tissue Architecture and Gene Expression

Nagomi Kurogi, Tatsuya Koreeda

2025Volume 6Issue 1 Pages 1-10
Published: 2025
Released on J-STAGE: June 11, 2025

DOIhttps://doi.org/10.11234/jsbibr.2025.primer1

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Review

Mathematics for Heterogeneous Biological Data Fusion Analysis with Matrix-Tensor Factorization

―Part VI. Sequential Data―

Koki Tsuyuzaki, Hirotaka Matsumoto

2025Volume 6Issue 1 Pages 11-28
Published: 2025
Released on J-STAGE: June 11, 2025

DOIhttps://doi.org/10.11234/jsbibr.2025.1

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Reflections of Sine Wave Effects and Horseshoe Effects in Sequential Data

―From the Perspective of Laplacian Eigenmaps of Path Graph―

Hirotaka Matsumoto, Koki Tsuyuzaki

2025Volume 6Issue 1 Pages 29-40
Published: 2025
Released on J-STAGE: June 11, 2025

DOIhttps://doi.org/10.11234/jsbibr.2025.2

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Biological system identification using deep generative models for high-resolution omics data

Yasuhiro Kojima

2025Volume 6Issue 1 Pages 41-50
Published: 2025
Released on J-STAGE: June 11, 2025

DOIhttps://doi.org/10.11234/jsbibr.2025.3

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Advances in Chromatin State Analysis Tools and Their Applications

Seohyun Lee, Ryuichiro Nakato

2025Volume 6Issue 1 Pages 51-59
Published: 2025
Released on J-STAGE: June 11, 2025

DOIhttps://doi.org/10.11234/jsbibr.2025.4

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