IPSJ Transactions on Bioinformatics
Online ISSN : 1882-6679
ISSN-L : 1882-6679
Selective Inference for High-order Interaction Features Selected in a Stepwise Manner
Shinya SuzumuraKazuya NakagawaYuta UmezuKoji TsudaIchiro Takeuchi
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ジャーナル フリー

2021 年 14 巻 p. 1-11

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In this paper, we study a stepwise feature selection algorithm for a high-order interaction model and we propose a new statistical inference for selected high-order interaction features. Feature selection and statistical inference for high-order interaction features are challenging tasks because the possible number of those interactions is extremely large. Our main contribution is to extend recently developed selective inference framework to high-order interaction model by developing a pruning technique for searching over tree which represents high-order interaction features. We demonstrate the effectiveness of the proposed approach by applying it to several synthetic problems and an HIV drug resistance prediction problem.

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© 2021 by the Information Processing Society of Japan
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