Journal of Chemical Software
Online ISSN : 1883-8359
Print ISSN : 0918-0761
ISSN-L : 0918-0761
Molecular Dynamics Simulation of Biological Molecules (2) Practice
Yuto KOMEIJI, Sumie TAJIMA, Makoto HARAGUCHI, Nobuyuki TAKAHASHI, Masami UEBAYASI, Umpei NAGASHIMA
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Keywords: Program for Energetic Analysis of bioCHemical molecules (PEACH), Molecular Dynamics (MD), Protein, DNA
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2001 Volume 7 Issue 1 Pages 1-28

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Abstract

Molecular dynamics simulation has been extensively applied to analyses of structure, dynamics, and the function of biological molecules. In this review, the practical procedures of molecular dynamics simulations of a protein and DNA by using the software PEACH (Program for Energetic Analysis of bioCHemical molecules) are described.

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© 2001 by the Chemical Software Society of Japan
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JCPE Journal

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