The Journal of General and Applied Microbiology
Online ISSN : 1349-8037
Print ISSN : 0022-1260
ISSN-L : 0022-1260
Full Papers
Phylogenetic comparison of methanogen diversity in different wetland soils
Motoo UtsumiSvetlana E. BelovaGary M. KingHiroo Uchiyama
著者情報
キーワード: Archaea, Methanosarcina, peat
ジャーナル フリー

2003 年 49 巻 2 号 p. 75-83

詳細
抄録
Aspects of archaeal diversity in peat soil samples from climatically and geographically distinct wetlands (subarctic: West Siberia Bog, Russia; temperate: Akaiyachi Mire, Japan; subtropical: Okefenokee Swamp, USA) were studied by molecular phylogenetic techniques. DNA was extracted directly from the soil samples and 16S rRNA genes were amplified by polymerase chain reaction. Partial sequences of the amplified 16S rDNAs (total 426 clones) were compared with known sequences from GenBank and the Ribosome Database Project (RDP). Peat-derived sequences were mostly related to Euryarchaeota, principally methanogens. Sets of sequences (operational taxonomic unit; OTU) were created for each wetland (21 OTUs for West Siberia; 22 OTUs for Akaiyachi; 33 OTUs for Okefenokee). The majority of the OTUs clustered in and showed low similarities to the Methanosarcinales family (West Siberia) or the Methanomicrobiales family (Akaiyachi and Okefenokee). In terms of the Shannon-Weaver diversity index, the archaeal community diversity in Okefenokee Swamp was greater than that of the other wetlands.
著者関連情報
© 2003 by The Applied Microbiology, Molecular and Cellular Biosciences Research Foundation
前の記事 次の記事
feedback
Top