A freshwater shrimp, Neocaridina denticulata (De Haan, 1844), distributed over a wide area of western Japan, has a land-locked life history and lives its entire life in freshwater. This species also occurs on adjacent islands, and some populations are genetically distinct from mainland populations. Since this species cannot disperse beyond the sea, the island populations are believed to be remnants of past connections with the mainland. Here we report N. denticulata from Uku Island in the Goto Islands. Phylogenetic analysis based on the mitochondrial DNA COI region showed that the Uku population was included in the lineage of N. denticulata, which is mainly found in mainland Kyushu, and had a unique haplotype, suggesting that it is native to the island. Compared with the N. denticulata population from Fukue Island in the Goto Islands, southwest of Uku Island, the Uku population was more closely related to the mainland Kyushu population. This suggests that the geographic isolation of Uku Island from mainland Kyushu is weaker than that of Fukue Island. We also report N. ikiensis Shih, Cai, Niwa & Nakahara, 2017, endemic to Iki Island, from mainland Kyushu and an invasive species, N. davidi (Bouvier, 1904), in a wide area of Kyushu, including Fukue Island.
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