Damage, Repair-Recovery, DNA Damage, Repair Associated Gene (Enzyme), Genetic Disease
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Tetsuya KAWATA, Momoe KAN'O, Cuihua Liu, Masayoshi SAITO, Hiroyuki KAW ...
Session ID: P1-1
Published: 2006
Released on J-STAGE: March 13, 2007
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Mechanisms of AT cell hyper-radiosensitivity were investigated by analyzing chromosome aberrations using fluorescence in situ hybridization (FISH) with chromosome painting probes. Confluent cultures of normal fibroblast cells (AG1522) and fibroblast cells derived from an individual with AT (GM02052) were exposed to gamma-rays and allowed to repair for 24-hr. At 10 % survival doses, GM02052 cells were approximately 5 times more sensitive to gamma-rays than AG1522 cells. For a given dose, GM02052 cells contained a much higher frequency of deletions and misrejoining than AG1522 cells. For both cell types, good correlation was found between the percentage of aberrant cells and cell survival. These results indicate that both repair deficiency and misrepair may be involved in AT hyper radiosensitivity. We further studied PLDR in normal and AT cells. The frequency of chromosome aberrations decreased when AG1522 cells were allowed to repair for 24-h, whereas 24-hour incubation had little effect on the frequency of chromosome aberrations in GM02052 cells. Since the main mechanism for dsbs repair during G0 and G1 phases of the cells cycle involve the non-homologous end-joining (NHEJ) process, our study indicates that for normal fibroblast cells the NHEJ repair process is more likely to induce accurate chromosome repair under quiescent G0 conditions than proliferating G1 phase, while in AT cells the fidelity of NHEJ is similarly defective at either cell cycle phase. Reduced fidelity of NHEJ may be the reason for PLDR defect in AT cells and for its hyper-radiosensitivity.
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Rii TERANISHI, Yuki NISHIDA, Satoshi MATSUYAMA, Kikuya SUGIURA, Hirosh ...
Session ID: P1-2
Published: 2006
Released on J-STAGE: March 13, 2007
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Base Excision Repair (BER), a predominant pathway to repair small base damages, includes two sub-pathways, short-patch and long-patch BER. Since it has been suggested that long-patch BER is dependent on PCNA, it is possible that this sub-pathway is more effective in S phase than in other phases. In this study, to compare the mode of BER in G1 and S phase cells, we analyzed the numbers of methyl methansulfonate (MMS)-induced AP sites in G1 and S phase cells. We first synchronized HeLa RC355 cells in G0/G1 phase by serum starvation/mitotic selection method. After releasing the synchronized cells, we examined the numbers of apparent MMS-induced AP sites in G1 and S phase cells using the ARP method. We found no significant difference between the numbers of cellular AP sites in both phases. Next, we have directly analyzed intracellular AP sites using the FARP-1 method and a flow cytometer. After MMS treatment (2.5 and 5 mM), more AP sites were detected in S phase. The result is consistent with that of ARP assay, since more DNA should be included in a single S phase cell than in a G1 cell. Thus, These results suggest that both G1 and S phase cells efficiently repair the methylated bases by BER.
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Norio UEMATSU, Jun TAKEDA, Hideki NAGAI, Ohtsura NIWA
Session ID: P1-3
Published: 2006
Released on J-STAGE: March 13, 2007
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Irradiation causes various DNA damages, directly or indirectly. One of the important damages is the DSB, which could be followed by huge genomic alteration such as DNA deletion or genomic rearrangement. Thus the repair of DSB is significant process to maintain genomic information. At the first step of the repair, it could be crucial to change chromatin status for increasing the accessibility of repair enzymes. In this context, the modification of histones at the DSB site is to be elucidated. We are establishing a new system to harvest local chromatins in the mouse genome. Using this system, the kinetic change of chromatines at the DSB site could be analysed.
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Toshiaki MORI, Kohei YOSHIDA, Rie FUJIWAKI, Kenji OHTANI, Takashi YAGI ...
Session ID: P1-4
Published: 2006
Released on J-STAGE: March 13, 2007
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Reactive oxygen species (ROS) generate oxidative damage to DNA and cause mutation. 8-oxoG, an oxidative form of guanine, pairs with adenine as well as cytosine. 8-oxodGTP is incorporated opposite adenine on template DNA as well as cytosine during DNA replication inducing A:T to C:G. base substitution if not the mismatch repaired.
MutT (8-oxodGTP pyrophosphohydrolase, 8-oxodGTPase) prevents an incorporation of the 8-oxoG by hydrolysis of 8-oxodGTP to 8-oxo-dGMP in E. coli. MutT system should be an essential function to suppress mutation because E. coli strain without such genes is quite highly mutable. Functional homolog of MutT has been found in human, mouse and rat (MTH1) and Arabidopsis (AtNUD1). We investigated 8-oxodGTPase activity in C. elegans. Crude extracts from C. elegans hydrolysed 8-oxodGTP to 8-oxo-dGMP. Purification of the extracts was carried out by salting-out, ultrafiltration, ion exchange and heparin chromatography. Partially purified enzyme contained the activity to hydrolyze 8-oxodGTP to 8-oxo-dGMP . Mg
2+ ion was required for the activity and an optimum pH was in alkaline regions. The preparation hydrolyzed 2-OHdATP to 2-OHdAMP and did not dATP and dGTP. The enzyme was suggested to be the MTH1 type in mammalian cells.
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Akinari YOKOYA, Takeshi USHIGOME, Naoya SHIKAZONO, Kentaro FUJII, Ayum ...
Session ID: P1-5
Published: 2006
Released on J-STAGE: March 13, 2007
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The goal of our study is to clarify the nature of DNA damage in relation to track structure of radiation. The yields of single- and double-strand breaks (SSB and DSB), base lesions and clustered damage induced in closed-circular plasmid DNA (pUC18) were measured after exposing to various kinds of radiation (He, Ne and C ions; 20 to 500 keV/m, soft X-rays; 150 kVp). To focus on the effect of direct energy deposition from radiation track, we prepared hydrated DNA (35 water molecules per nucleotide) as well as solution sample with various scavenging capacities. Base excision repair enzymes, EndoIII and Fpg, were used to detect oxidative base lesions. The obtained results show that 1) the yield of directly induced SSB by the soft X-irradiation is about 30 % of total SSB yields induced in a cell mimetic condition and 2) the SSB yield does not significantly depend on the quality of radiation, whereas DSBs are induced at relatively higher yield by both higher LET ion- and soft X-irradiation. On the other hand, 3) the yields of base lesions show a maximum by soft X- irradiation and drastically decreases with increasing of LET. 4) Soft X-ray photons are more effective in inducing base lesions than ions with similar LET, and 5) EndoIII treatment gives significantly higher yield of base lesion than Fpg treatment for all irradiation samples. The mechanism of DNA damage induction by various kinds of radiation will be discussed by comparing the experimental results with track structures examined by computational simulation studies.
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Hideaki MAEKAWA, Miyoko OIKAWA, Kimiaki SAITO, Hirofumi FUJIMOTO, Zhen ...
Session ID: P1-6
Published: 2006
Released on J-STAGE: March 13, 2007
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Detection of DNA strand breaks by radiation was carried out using real-time PCR amplification. Gamma irradiation to pBR322 plasmid DNA solutions was done by 137Cs as dose of 0Gy to 150Gy. 1003bp, 505bp and 243bp fragments were amplified by combined primer sets for the plasmid solution including Tris-HCl as a radical scabenger. Higher amplification values such as over 300% to the non-irradiated solution (100%) were observed and could be depending on rate of closed circular shape (CC) and open circular shape (OC) in the original solution of pBR322 used in each experiment. One suitable explanation that the CC is difficult to be amplified by the PCR reaction and structurally changed CC after aberrations ca;used by radicals is possible to be amplified by the real-time PCR. The evident piaks in three amplified fragments were observed at 15 to20 Gy and different values from peak (80Gy) of electrophoresis data concerning sift from CC to OC. The results of the Monte Carlo simulation calculation were not completely fit to the practical PCR data. Therefore, parameters by electrophoresis data should be modified and then we tried to compare with the simulation data using novel break-induced probabilities. We will present that the real-time PCR method predicted that the break-induced probability derived from simulation calculation based on exchanging rate of CC to OC by irradiation on the electrophoresis should be estimated as about 2 times.
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Toshiaki MORI, Nobuyuki MAGOME, Yuko YOSHIKAWA
Session ID: P1-7
Published: 2006
Released on J-STAGE: March 13, 2007
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Types of DNA damage induced by ionizing radiation are characterized as base modifications, strand breaks and crosslinking. It is well known that these damages are induced mostly by hydroxyl radical. Hydroxyl radical is thought to attack DNA bases more extensively than the sugar phosphate backbone of DNA; however, one fifth of hydroxyl radicals attack DNA backbone to produce the scission of deoxyribose phosphate bonds, leading to single and double strand breaks. If not repaired, double strand breaks (DSB) may lead to cell death, genomic instability, and carcinogenesis. Thus, studies of the formation mechanisms of DSB induced by ionizing radiation are of utmost importance.
Recently, by controlling DNA structures in aqueous solutions, we produced compactly folded DNA and unfolded forms of DNA by addition of polyamine compounds. We selected T4 DNA as a suitable model for the observation of higher-order structures of DNA. We irradiated dilute DNA solutions having different structures by cobalt 60 gamma rays. DSBs induced by gamma rays were observed using fluorescence microscopic technology. In this work, we will present the technical details of our studies, and the results of the relationships between the higher-order structures of DNA and DNA damage by ionizing radiation.
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Keiichi TAkAGI, Masanori HATASHITA, Shigekazu FUKUDA, Kyo KUME, Hideki ...
Session ID: P1-8
Published: 2006
Released on J-STAGE: March 13, 2007
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Heavy ion beams provokes heavier damages to cells than γ-, and X-ray at the same absorbed dose. On the other hand, proton beams induce almost the same damages as X-ray and γ-ray done. Such a difference seems to be due to the different distribution pattern of deposited energies along the particle track, rather than the total amount of deposited energy. The density of cellular damages generated along the track of heavy ions with high linear energy transfer (LET) might be higher than that of protons, X-rays, and γ-rays.
After the application of stimuli evoking DNA double-strand break (DSB) such as an ionizing radiation to a cell, spots of phospholyrated histone 2 AX (γ-H2AX), so-called foci, appear in the cell nucleus. γ-H2AX is thought to provide scaffolds for DSB repair proteins such as Mre11/Rad50/NBS1 complex, Rad51, Ku70, and DNA-PKcs. H2AX surrounding the DSB point phosphorylated at the serine 139 residue within a few minute after the DSB-evoking stimuli. Therefore, it is expected that the morphology of γ-H2AX foci reflect the energy deposition pattern along the particle track.
In the present study, we immunocytochemically stained γ-H2AX foci after the irradiation of X-rays(130 kVp), proton beams (200 MeV), and carbon beams (350 MeV), and compared the morphological aspects of the foci by means of a laser-confocal microscopy. We report some structural differences of γ-H2AX foci formed after carbon beam irradiation.
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emiko sekine, maki okada, dong yu, miho noguchi, yoshihiro fujii, akir ...
Session ID: P1-9
Published: 2006
Released on J-STAGE: March 13, 2007
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In order to understand the LET and nuclide dependency in DNA DSB repair process of cells irradiated with high LET heavy ion particles, we have studied the biological effect in human cells exposed to various heavy ions with different LET values.
We examined cell survival and DNA double strand break (DSB)/chromosome break repair in human cells irradiated with high LET radiation. Normal human fibroblast (HFLIII) and NHEJ deficient cells (180BR) were irradiation with carbon ion (LET; 200keV/micro m), neon ion (LET; 70keV/micro m or 200keV/micro m), and silicon ion (LET; 70keV/micro m or 200keV/micro m) radiation. After 0, 2, 6, 24 hours, the DSB repair process was monitored by the G1-type premature chromosome condensation (PCC) technique. The cell survival assay was also performed with the identical radiation sources.
The repair process of cells irradiated with neon ion (400MeV/u, LET; about 70keV/micro m) and silicon ion (490MeV/u, LET; about 70keV/micro m) were slower than that with x-ray and carbon ions (290MeV/u, LET; about 70keV/micro m). We have observed a higher number of remaining excess chromosome fragments by high LET (200keV/micro m) radiation than that by low LET (70keV/micro m) radiation. These data correlated well with the cell survival data. Upon exposure to the same radiation sources, the PCC rejoining process was significantly slower in 180BR cells than in normal cells, resulting in an excess remaining chromosome fragments in the sensitive cells.
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Yuka NAKAZAWA, Vladimir SAENKO, Tatiana ROGOUNOVITCH, Hiroyuki NAMBA, ...
Session ID: P1-10
Published: 2006
Released on J-STAGE: March 13, 2007
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Papillary thyroid carcinoma (PTC) is a well-known type of radiation-induced malignancy in man. PTC tissue consists not only of epithelial but also of other types of cells, including those of mesothelial origin that form tumor stroma. To better understand the particularities of radiation-induced DNA damage in the thyroid, in this work we used model cultures composed of primary human thyrocytes (PT), normal diploid fibroblasts (BJ) and their mixtures to examine γH2AX foci after exposure.
In mixed cultures, the kinetics of γH2AX foci number changes was dose-dependent and similar to that in monocultures of BJ and PT. However, the numbers of γH2AX foci in mixed cultures was significantly lower in both types of cells comparing to monocultures. To investigate the mechanism of the protective effect, we studied the role of gap junction intercellular communications (GPIC). Blockage of GPIC with lindane lead to the increase in radiation-induced γH2AX foci numbers both in monocultures and mixed cultures in both BJ and PT, but the extent of γH2AX foci numbers restoration in mixed cultures did not reach the levels observed in monocultures, indicating that GJIC are only partly responsible for the diminished DNA damage.
Mixed cultures of BJ fibroblasts and PT display lower levels of radiation-induced DNA damage than in monoculture suggestive of the involvement of paracrine factors. Efficacy of DNA repair is not changed in mixed cultures. In the unfavorable environment leading to GJIC dysfunction, extent of DNA damage is higher then under normal conditions.
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Ayumi URUSHIBARA, Naoya SHIKAZONO, Akinari YOKOYA
Session ID: P1-11
Published: 2006
Released on J-STAGE: March 13, 2007
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Ionizing radiation induces various types of DNA lesions, such as strand breaks, oxidative base lesions and, in particular, biologically relevant complex damage known as clustered DNA damage sites, which consist of two or more elemental lesions within two helical turns of DNA. Recent
in vitro studies have shown that the repair of lesions within clusters may be retarded, but less in known about the mutagenic effects of clustered damage
in vivo. We have investigated the mutagenic potential of bistranded clustered damage site which consists of 8-oxo-7, 8-dihydroguanine (8-oxoG) and thymine glycol (TG), with 8-oxoG placed within a restriction site on one strand and TG positioned at site 1 bp away on the opposing strand. Damaged DNA was transfected into wild-type and glycosylase deficient mutant cells (
fpg, mutY, nth, nei, fpg mutY, nth fpg mutY, fpg mutY nei) of
E. coli, and mutations were determined by inability to cut the restriction site. Mutation frequencies were found to be significantly higher for the clustered TG + 8-oxoG lesions than for each of the single lesions, suggesting that the repair of the clustered damage site is retarded. The results of the mutation frequencies for clustered TG + 8-oxoG lesion and our previous results for dihydrothymine (DHT)+ 8-oxoG will be compared and discussed.
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CHIYOKO NAKANE, RYOUHEI YOSHIHARA, KOICHI TAKIMOTO
Session ID: P1-12
Published: 2006
Released on J-STAGE: March 13, 2007
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Ultraviolet (UV) radiation induces pyrimidine dimmers, which cause mutation at dipyrimidine site on DNA. Two types of pyrimidine dimers, cyclobutane pyrimidine dimer (CPD) and (6-4) photoproduct, are known and both of them inhibit growth of organisms. Plants grown under the solar radiation are continuously exposed to high dose of UV. Some species of plants are sensitive to UV. If the sensitivity is due to DNA damages induced by UV, increased efficiency of the repair of pyrimidine dimers may lead to UV resistance of plants. Approximately 70% of UV induced pyrimidine dimers are CPD. Spinach CPD photolyase gene was introduced into wild type
Arabidopsis thaliana to investigate the enhanced resistance to UV. The CPD photolyase gene was inserted in the down stream of CaMV 35S promoter on the vector pBI121. We introduced this construct in
Arabidopsis mediated by
Agrobacterium by the floral dip method and obtained several transgenic plants. The incorporation of the gene into plant genome was determined by PCR and the expression of the gene by RT-PCR. The rate of the growth of transgenic
Arabidopsis irradiated with UV-B was higher than that of wild type. These results show that growth inhibition by UV-B was diminished by an addition of CPD photolyase gene, suggesting the possibility to improve the UV sensitivity of plant by introducing DNA repair gene.
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Ken TSUCHIDA, Hiroshi KUKIHARA, Hiromi YANAGIHARA, Kenshi KOMATSU
Session ID: P1-13
Published: 2006
Released on J-STAGE: March 13, 2007
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DNA interstrand cross-links (ICLs) are the DNA damage that both strand of the double helix are covalently joined by single ICL agents widely used as a potent antitumor drugs. Since, ICLs prevents strand separation, DNA replication, transcription and recombination are strongly blocked by this lesions. Despite the medical relevance of ICL, detail of its repair in mammalian cells remain unclear. Here, we have developed the psoralen-based quantitative assay system (Psoralen-PEO-biotin excision assay: PPBE assay), which can detect 10 - 20 ICLs in a mammalian cell. This method can detect the complete removal of the ICL agents from the genome DNA. The analysis using this system revealed that FA-G and FA-A cells are deficient in removal of ICLs, while repair proficient cells can remove up to 2,500 ICLs in 48 hrs. Furthermore, normal kinetics of removal was observed in homologous recombination deficient cells, but not in XPF, MSH2 and Rev3 deficient cells. These results indicated that FANC core complex proteins, XPF, MSH2 and Rev3 are required for removal of ICL, possibly at an earlier step than homologous recombination in ICL repair.
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Ryouhei YOSHIHARA, Koichi TAKIMOTO
Session ID: P1-14
Published: 2006
Released on J-STAGE: March 13, 2007
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We developed a positive detection system of mutation occurring on chromosomal DNA in higher plant. Plasmid pML4 carrying
E. coli rpsL gene, a target gene for mutagenesis was introduced into plant. After the transgenic plant was treated with mutagen. pML4 was rescued from plant genome. Streptomycin (Sm)-resistant
E. coli transformed with rescued pML4 was spread on LB agar medium containing Sm. Only
E. coli cells containing pML4 carrying an inactivated
rpsL by mutation are able to grow on the medium containing Sm because mutated
rpsL gene is insensitive to Sm. Thus the newly developed system is a valuable for detection and analysis of mutation occurring on chromosomal DNA in higher plants.
Arabidopsis thaliana was transformed with pML4, which was carried by pCGN5138 via
Agrobacterium by floral dip method. Typical base change mutations, G:C to A:T transition, were found in the plants grown from transgenic
Arabidopsis seeds treated with EMS. The type of base change preferred occurring on guanine at 5'-PuG-3' sequence. Plants on the earth continuously irradiated with solar UV and whereas possess UV-protecting systems such as photoreactivation and UV-absorbing pigments. We are investigating whether UV-induced mutation in
Arabidopsis is detected or not.
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Hiromi YANAGIHARA, Ken TSUCHIDA, Toshio MORI, Junya KOBAYASHI, Kenshi ...
Session ID: P1-15
Published: 2006
Released on J-STAGE: March 13, 2007
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Nijmegen breakage syndrome(NBS), characterized by high sensitivity to ionizing radiation (IR) and predisposition to lymphoid cancer, is phenotypically similar to Ataxia telangiectasia (AT). It is well known that NBS1, the protein responsible for NBS, is cooperative with ATM, mutated in AT, for IR-induced DNA damage response such as double-strand break repair and cell cycle checkpoints. Recently, it was also reported that NBS shares common clinical signs with ATR-defective Seckel syndrome, such as microcephaly, and NBS cells is similarly defective in response to hydoxyurea (HU) treatment. Since ATR, a family gene of ATM kinase, functions in stalled replication fork after HU treatment or UV exposure, NBS1 might associate with ATR during stalling replication forks. Our result showed that NBS1 formed the discrete foci in UV-irradiated cells. To investigate the mechanism of its foci formation, we have generated a series of NBS1 mutant and determined a crucial domain for the foci formation. As a result, NBS1 mutant lacking FHA domain was able to form UV-induced foci, while FHA domain is essential for interaction with histon H2AX at damaged sites to form IR-induced foci. This was confirmed by observation that H2AX knockout cells can form NBS1 foci at the UV-exposed sites. The H2AX-independent foci formation was confined to S-phase cells after UV exposure. These results indicated that NBS1 is recruited to UV-induced damage sites by different mechanism from IR-induced foci formation, probably for functions of ATR in response to UV damages.
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Katsutoshi SUETOMI, Sentaro TAKAHASHI, Akira FUJIMORI, Yoshihisa KUBOT ...
Session ID: P1-16
Published: 2006
Released on J-STAGE: March 13, 2007
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DNA ligase IV is one of the key proteins that are associated with DNA double strand break (DNA DSB) repair through the non-homologous end joining (NHEJ) pathway. We designed 21 bp small interfered double stranded RNA (siRNA) on the basis of its specific DNA sequence, and transfected Hela cells with the DNA ligase IV siRNA. The RNA and protein expression levels of DNA ligase IV, cell growth, DNA DSB ratio were examined in the siRNA-transfected and mock-transfected cells. The morphological analysis with a fluorescence microscope was carried out in the cells to examine the mode of cell death. The colony formation of the cells irradiated with X-ray was also investigated. Compared to the cells with mock-transfection, the RNA and protein expressions were remarkably reduced in the siRNA-transfected cells. The expression of XRCC4 protein, which forms the complex with DNA ligase IV in the cells, was also reduced. And a decrease on cell growth and a increase on DNA DSB were observed in the siRNA-transfected cells. The cells exhibited the morphological changes due to the typical necrotic cell death. These results indicate that necrotic cell death could be promoted in human cancer cells by reducing the expression of DNA ligase IV using RNA interference technology. But only slight decrease on cell survival was shown in X-irradiated cells transfected with the siRNA. Further investigation must be done to apply the technology to radiosensitization of cancer cells.
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Mari KATSURA, Osamu DATE, Kiyoshi MIYAGAWA
Session ID: P1-17
Published: 2006
Released on J-STAGE: March 13, 2007
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The Rad51-like proteins-Rad51B, Rad51C, Rad51D, XRCC2, and XRCC3-have been shown to form two distinct complexes and appear to assist Rad51 in the early stages of homologous recombination. Although these proteins share sequence similarity with Rad51, they do not show functional redundancy. Among them, Rad51B is unique in that the gene maps to the human chromosome 14q23-24, the region frequently involved in balanced chromosome translations in benign tumors, particularly in uterine leiomyomas. Despite accumulating descriptive evidence of altered Rad51B function in these tumors, the biological significance of this aberration is still unknown. To assess the significance of reduced Rad51B function, we deleted the gene in the human colon cancer cell line HCT116 by gene targeting. Here we show that haploinsufficiency of RAD51B causes mild hypersensitivity to DNA-damaging agents, a mild reduction in sister-chromatid exchange, impaired Rad51 focus formation, and an increase in chromosome aberrations. Remarkably, haploinsufficiency of RAD51B leads to centrosome fragmentation and aneuploidy. In addition, an approximately 50% reduction in RAD51B mRNA levels by RNA interference also leads to centrosome fragmentation in the human fibrosarcoma cell line HT1080. These findings suggest that the proper biallelic expression of RAD51B is required for the maintenance of chromosome integrity in human cells.
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Yousuke Ota, mikio Shimada, Jyunya Kobayashi, Kenshi Komatsu
Session ID: P1-18
Published: 2006
Released on J-STAGE: March 13, 2007
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DNA double strand breaks (DSBs) are induced by expose to ionizing radiation. The ends of DSB are processed by nuclease, such as Mre11, which is also involved in regulation of cell cycle checkpoints and repair of DSB. Here, we investigated the inhibitory effect on nuclease activity in responses to DSB. It is known that IR induces the foci formation of histone H2AX, and thereby recruitment of NBS1/MRE11/RAD50 complex to damaged sites. However, inhibition of nuclease activity altered the foci formation of phospho-H2AX(gamma-H2AX), and results in failure of NBS1, MDC1, phospho-ATM foci formation. In contrast, western blot analysis revealed phosphorylation of these proteins at a normal revel, suggesting that this disturbance of foci formation is not due to repression of ATM-dependent phosphorylation. Moreover, this nuclease activity are involved in IR-induced cell death. Although Ku70-/- mouse cells show hyper-sensitivity to IR, the inhibition of nuclease alleviated the IR-induced cell death. Since DSB repair is mainly regulated by two pathways; NHEJ(non homologous end joining) and HR(homologous recombination), we are investigating HR ability in Ku70-/- cells using DR-GFP assay.
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Jun SATO, Junya KOBAYASHI, Ikue HAYASHI, Kenshi KOMATSU
Session ID: P1-19
Published: 2006
Released on J-STAGE: March 13, 2007
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Double-strand breaks (DSBs) are generated within genome DNA after exposure to Ionizing Radiation (IR) or DNA damaging agents. Cells recognize DSBs immediately then activate cell cycle checkpoints and initiate repair of the damaged DNA. H2AX, histone H2A variant, is a candidate of DNA damage sensor protein, because H2AX is phosphorylated in an earlier step by PI3KK (phosphatidylinositol 3-kinase like kinase) and this phosphorylation is indispensable for foci formation of NBS1 protein at DSB sites. Moreover, H2AX forms a complex with NBS1 and ATM, which play an important role for DNA damage response. To clarify the role of H2AX in DNA damage response, we attempted to identify H2AX-binding proteins by pull-down assay using GST-tagged H2AX and GST-tagged H2AX (S139E). Thereby, we identified nucleolin as a candidate of H2AX-interacting protein by mass spectrometry analysis. Nucleolin is a major nucleolar protein in eukaryotic cells and directly involved in the regulation of ribosome biogenesis and maturation. Moreover, nucleolin re-localized from nucleolus to nucleoplasm in response to DNA damage and interacted with RPA, which is crucial for DNA damage response after DNA replication stress. These results suggest the functional interaction of nucleolin with H2AX.
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Yuichiro YOKOTA, Shinya YAMADA, Yoshihiro HASE, Naoya SHIKAZONO, Issay ...
Session ID: P1-20
Published: 2006
Released on J-STAGE: March 13, 2007
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The ability of ion beams to kill or mutate plant cells is known to depend on LET of the ions, although the mechanism of damage is poorly understood. In this study, DNA double-strand breaks (DSBs) were quantified by a DNA fragment-size analysis in tobacco protoplasts irradiated with high-LET heavy ions.
Tobacco BY-2 protoplasts, as a model of single plant cells, were irradiated by helium, carbon and neon ions with different LETs at ice temperature. Resulting DNA fragments were separated into sizes by pulsed-field gel electrophoresis. Initial DSB yields and intervals between neighboring DSBs were evaluated from the DNA fragmentation patterns.
Initial DSB yields (Gbp DNA
-1 Gy
-1) were found to depend on LET, and the highest value was obtained at 124 and 241 keV/μm carbon ions in the investigated range. High-LET carbon and neon ions induced DSBs at closer sites than gamma rays did. These results partially explained the large biological effects caused by high-LET heavy ions in plants.
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Toyo OKUI, Yutaka KANAE, Daiji ENDOH, Daisuke FUKUI, Masao KOSUGE, Shi ...
Session ID: P1-21
Published: 2006
Released on J-STAGE: March 13, 2007
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[Purpose] It is known that Ku70 protein, a subunit of DNA-dependent protein kinase, plays an important role in a repair of DNA double strand breaks (DSB). We have reported that more than 70% of Ku70 proteins existed in the cytoplasm compartment of unirradiated fibroblasts of normal rat and Ku70 protein translocated into nuclei after X-irradiation. The translocation into nuclei is necessary for DSB repair. In contrast, substantially all Ku70 proteins were found in the nuclei of unirradiated and irradiated human fibroblasts. In this study we investigated the localization of Ku70 proteins in unirradiated and X-irradiated fibroblasts derived from various mammalian species. [Materials and Methods] Fibroblasts from 5 primates and 10 non-primates were subjected to immunofluorescence observation of Ku70 protein using conforcal laser microscopy with and without X-irradiation (4 Gy). [Results and Discussion] In the fibroblasts from all primates, substantially all Ku70 proteins were found in the nuclei of both unirradiated and irradiated cells. In contrast, more than 50% of Ku70 proteins were found in the cytoplasm of unirradiated fibroblasts other than primate cells. Most of Ku 70 proteins were also found in the nuclei of the non-primate cells at 20 min post-irradiation. These results suggest that radiation-induced nuclear translocation occured in the non-primate cells and initial stage of DSB repair are different between primate cells and non-primate cells.
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Junko KAJIMURA, Mai YOSHIDA, Hiromitsu WATANABE, Hiroaki HONDA, Yuji M ...
Session ID: P1-22
Published: 2006
Released on J-STAGE: March 13, 2007
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Purpose: Rev1, the member of the Y-family DNA polymerase, has deoxycytidyl transferase activity that incorporates dCMPs on the opposite to an abasic site. This study sought to determine how increasing Rev1 affects the mutagenicity and the frequency of tumor occurrence in a mouse model. Methods and Results:
Rev1 transgenic mice carrying murine
Rev1 cDNA under the metallothionein promoter and wild type mice (C57BL/6N) were treated with
N -methyl-
N -nitroso urea (MNU) and examined for their development of lymphoma and small intestinal tumor. We found that incidence of lymophoma increased in female
Rev1 transgenic mice and that the number of small intestinal tumor increased in male
Rev1 transgenic mice. Cell surface and molecular analyses of lymphoma cells revealed that tumors developed from various differentiation stages of T cells and in some case had point mutations in
Ikaros or
p53 genes, irrespectively of gender or
Rev1 statuses. We also found that the number of small intestinal tumor per mouse increased in
Rev1 homozygous compared with that of wild type and
Rev1 hemizygous mice. These results suggest that Rev1 may enhance the susceptibility to MNU tumorigenicity in gene-dose dependent manner in vivo.
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Yuji MASUDA, Ryo KOMINAMI, Kenji KAMIYA
Session ID: P1-23
Published: 2006
Released on J-STAGE: March 13, 2007
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Translesion DNA synthesis is essential for the maintenance of chromosomal integrity as well as the DNA repair function. It has been suggested that functions of the
REV genes are required for translesion DNA synthesis, essential for induction of mutations and prevention of cell death caused by ionizing radiation. REV1 is the deoxycytidyl transferase and forms a stable heterodimer with REV7. Recently, it has been found that the REV1 interacts with all of the Y-family DNA polymerases, pol eta, iota and kappa, suggesting the central role of REV1 in the translesion DNA synthesis.
We document a novel biochemical activity of human REV1 protein, which is due to higher affinity for single stranded DNA (ssDNA) than the primer terminus. After preferential binding to long ssDNA regions of the template strand, REV1 is targeted specifically to the included primer termini. Importantly, this property is not shared by other DNA polymerases, including human DNA polymerases eta, iota and kappa. Further, a mutant REV1 lacking N- and C-terminal domains lost only this function, indicating regulatory role of the both domains. The novel activity of REV1 protein might imply a role for ssDNA in regulation of translesion DNA synthesis.
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TATSUMOTO Takahiro, NISHIMURA Haruna, TERATO Hiroaki, IDE Hiroshi
Session ID: P1-24
Published: 2006
Released on J-STAGE: March 13, 2007
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Radiation produces various types of DNA lesions including oxidized bases, strand breaks, DNA-protein cross-links (DPCs), and interstrand cross-links (ISCs). DPCs and ISCs are also produced by exposure to aldehyde and platinum compounds. As contrasted with the repair mechanisms of oxidized bases and strand breaks, those of DPCs and ISCs have been poorly elucidated. DPCs are unique in that a bulky DPC protein is covalently bonded to DNA and hence could impair the access of factors involved in DNA transactions such as replication, transcription, and repair. We have investigated the repair mechanism of DPCs in prokaryotic cells. The
in vitro damage-excising activity of UvrABC varied significantly depending on the size of DPC proteins. Furthermore, studies with repair-deficient
E. coli cells show that nucleotide excision repair (NER) and recombinational repair are involved in the
in vivo repair of DPCs. In the present study, we analyzed the sensitivity of human cells to formaldehyde (FA) and 5-aza-2'-deoxycytidine (AZC). FA produces a covalent bond between a base and protein, and AZC is incorporated into DNA to produce a covalent bond between 5-azacytosine and CpG methyltransferase. Cells were treated with the DPC-inducing agents and cell viability was measured by colony formation. etailed data and discuss the possible repair mechanism in human cells.
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Hiroshi KUKIHARA, Ken TSUCHIDA, Kenshi KOMATSU
Session ID: P1-25
Published: 2006
Released on J-STAGE: March 13, 2007
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DNA cross-linking agent such as Mitomycin C (MMC) prevents DNA replication and activates S phase checkpoint by forming interstrand cross-links (ICLs). Though recent studies demonstrated that ubiquitylation occurs in response to various DNA damage, the analysis of ubiquitylation at stalled replication fork remain unknown. In order to analyze cellular regulation of ubiquitylation at stalled replication fork, we detected ubiquitylated protein in MMC treated cell by immunostaining with the antibody FK2 against conjugated ubiquitin. 8 hours after MMC treatment, multiple ubiquitylated proteins foci appeared approximately 80% in normal cells. Immunostaining using an antibody against cyclin A revealed that stalled replication fork-induced ubiquitylation in S phase-dependent manner. While Fanconi anemia cell lines (FA-G, FA-D2 cells) which is hypersensitivity to MMC showed ubiquitylation at the same level as normal cells, NBS1, Mre11 or BRCA1 deficient cells did not. Furthermore, we found that ubiquitylation requires several domains of NBS1, not only FHA, BRCT and Mre11 binding domain associated with homologous recombination but also ATM binding domain and ATM phosphorylation site associated with S phase checkpoint. In addition, ATM and phosphorylation site of SMC1 were also required for ubiquitylation. These results suggest that ubiquitylation at stalled replication fork functions in S phase checkpoint as well as DNA repair.
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Jun-ya TOMIDA, Tomoko ISHIKAWA, JIN-Hyeong KIM, Yasuhiro KAMEI, Ryu UE ...
Session ID: P1-26
Published: 2006
Released on J-STAGE: March 13, 2007
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Many types of DNA damage block replication fork progression during DNA synthesis because replicative DNA polymerases are unable to bypass altered DNA bases. To overcome this block, cells employ specialized translesion synthesis (TLS) polymerases, which can insert nucleotides opposite damaged bases. The process requires multiple polymerase switching events which include replacement of the high-fidelity DNA polymerase by TLS polymerase in the replication machinery arrested at the primer terminus and selection of a most suitable one among several TLS polymerases having different substrate specificity. The protein-protein interactions between TLS polymerases must play an important role for this process. Drosophila dPolh, dPoli, dRev1 are the members of Y-family DNA polymerase known to carry out TLS in vitro. We have searched for interactions between these TLS polymerases using yeast two-hybrid system. We demonstrated that dPolh interacts with C-terminal region of dRev1 whereas dPoli interacts with the dRev1 BRCT domain. We further localized the interaction region of dPolh by yeast two-hybrid assy and found four phenylalanine (F) residues at 26, 27, 564 and 565 are essential for the Rev1-interaction. On the other hand, we can not find such FF motif in dPoli. dPoli interact with dRev1 at two distinct domains [201-300, 558-654]. We also identified several proteins which interact with dPoli by screening the Drosophila cDNA library with yeast two-hybrid assay. Partial characterization of these proteins will be also described.
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Nobuya NAKAMURA, Jin-Ling SU, Shin-Ichiro YONEKURA, Shuji YONEI, Naoak ...
Session ID: P1-27
Published: 2006
Released on J-STAGE: March 13, 2007
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In living cells, various types of DNA damage are produced by reactive oxygen species and ionizing radiations. Most of oxidative DNA damage are primarily repaired by base excision repair (BER) system. DNA glycosylases excise damaged bases, releasing AP sites in the DNA. Then AP endonucleases and AP lyases cleave DNA, followed by repair synthesis and rejoining by DNA polymerases and DNA ligases. Most of all species so far examined have BER system. Therefore, BER plays an important role in maintenance of genome integrity. Endonuclease III (Nth) is a bifunctional glycosylase which excises oxidized pirimidines such as thymine glycol, and incises the resulting AP sites. The DNA glycosylase is conserved in many organisms, indicating that this enzyme plays an important role in removing oxidative damage from DNA. Neither OGG1 nor Nei homolog has been identified in
C. elegans to remove oxdative base damage. Nth homolog is a major glycosylase to recognize and remove oxidatively damaged bases such as 8-oxoguanine in
C. elegans. Recently, we cloned
C. elegans nth homolog gene (
Centh). In this study, we purified recombinant CeNth protein and examined the substrate specificity and reaction kinetics of CeNth.
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Yongqing GU, Yuji MASUDA, Kenji KAMIYA
Session ID: P1-28
Published: 2006
Released on J-STAGE: March 13, 2007
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DNA helicase has a vital role for DNA metabolism. Some genetic diseases are caused by a missing function of such DNA helicases. It has been demonstrated that such DNA helicase has essential function to protect cells from UV or ionizing radiation, since cells defective in such DNA helicases exhibited severe sensitivity to UV or ionizing radiation.
PIF1, which is encoding a SFI superfamily of DNA helicase, was identified by yeast genetics as a gene required for prevention of replication fork stalling. This gene has been well conserved from yeast to mammals, suggesting crucial function for chromosome maintenance.
In this work, we identified a human
PIF1 homologue in database, and cloned it from HeLa cDNA library. The
PIF1 cDNA encoded a 69 kDa protein consisting of 641 amino acid residues. The
PIF1 gene consisted of 13 exons located on chromosome 15q22. For further analysis of the gene product, we purified the recombinant proteins from over produced
E. coli cells. Then we demonstrated that the gene has an ATPase activity in a single stranded DNA dependent manner, just like standard DNA helicases.
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JinLian PIAO, Yuji MASUDA, Kenji KAMIYA
Session ID: P1-29
Published: 2006
Released on J-STAGE: March 13, 2007
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Translesion DNA synthesis is essential for the maintenance of chromosomal integrity as well as the DNA repair function. It has been suggested that functions of
REV genes are required for translesion DNA synthesis, essential for induction of mutations and prevention of cell death caused by ionizing radiation. It has been suggested that functions of the
REV genes are required for error-prone post-replication repair, essential for induction of mutations and prevention of cell death caused by ionizing radiation. REV1 is the deoxycytidyl transferase and a member of the Y-family DNA polymerase. The activity is capable of extending a primer terminus by insertion of dCMP opposite a variety of damaged bases.
REV3 and
REV7 encode an error-prone DNA polymerase, pol ζ . Genetic data suggest that those proteins form specialized machinery for translesion DNA synthesis. We have demonstrated that human REV1 forms a stable heterodimer with REV7. Recently, it has been found that REV1 interacts with all of the Y-family DNA polymerases, pol η, ι and κ. These results suggested the central role of REV1 in the translesion DNA synthesis. In this report, we focused on the deoxycytidyl transferase activity of REV1, since the novel activity has been maintained throughout eukaryotic evolution, implying a contribution to survival.
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Junya KOBAYASHI, Steve M YANNONE, Kenshi KOMATSU, David J. CHEN
Session ID: P1-30
Published: 2006
Released on J-STAGE: March 13, 2007
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Werner syndrome (WS) is an autosomal recessive disorder with many features of premature ageing. The life span of fibroblasts derived from WS patients is much shorter than that of normal fibroblasts. WS cells also show genomic instability and sensitivity to certain genotoxic agents such as 4NQO. The responsible gene for WS, WRN belongs to RecQ helicase family and exhibits 3' to 5' helicase and 3' to 5' exonuclease activities. WRN protein forms foci at DNA damage site and interacts with Ku, DNA-PKcs, RPA and NBS1, suggesting that WRN functions for DNA repair. Recently, NBS1 was identified as a new interacting protein with WRN and functions in DNA repair and cell cycle checkpoints. Therefore, we investigated the functional interaction between WRN and NBS1 in DNA damage response.
As reported, WRN formed the complex with NBS1 with and without DNA damage and this complex also cotained BRCA1. In NBS cells WRN cannot form nuclear foci following exposure to IR and camptothecin treatment. WRN is phosphorylated in response to DNA damage, but this phosphorylations is defect in NBS cells. Moreover, the NBS1, mutated in FHA domain, cannot bind with WRN and not induce WRN phosphorylation. Taken together, NBS1 might mediate WRN function in DNA damage response such as recruitment and phopshorylation through interaction.
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Ryohei YAMAMOTO, Shigeo TAKENAKA, Hiroshi IDE, Kazuo YAMAMOTO, Satoshi ...
Session ID: P1-31
Published: 2006
Released on J-STAGE: March 13, 2007
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Like the
E. coli homologs, both of the known thymine glycol (Tg)-DNA glycosylases in mouse cell, mNTH1 and mNEIL1, possess bifunctional activities of Tg-DNA glycosylase and AP lyase. We have reported a novel monofunctional Tg-DNA glycosylase activity in nuclear extract of mouse organs. We purified the activity from nuclei in mouse organs with ammonium sulfate precipitation, hydrophobic, hydroxyapatite and ion exchange column chromatography, but could not completely separate the Tg-DNA glycosylase activity from minor AP lyase activity. When both activities were compared after different reaction time using the partially purified fraction from mouse stomach with Ceramic Hydroxyapatite Column (BIO-RAD), the reaction rate of Tg-DNA glycosylase activity was 6-times higher than that of AP lyase activity, suggesting either the small contamination of lyase or the association of the minor activity with major Tg-DNA glycosylase activity. Thus, we performed electrophoretic mobility shift assay of partially purified fractions from mouse lung with sodium borohydrate. The intensity of the protein-nucleotides band with a molecular mass of about 41-44 kDa correlated with the levels of Tg-DNA glycosylase activity and minor AP lyase activity, indicating the presence of about 35- 38 kDa protein which bound Tg-DNA substrate to form a covalent bond by reduction.
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Chihiro NASU, Satoshi MATSUYAMA, Hiroyuki KUSAKA, Kihei KUBO
Session ID: P1-32
Published: 2006
Released on J-STAGE: March 13, 2007
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There are multiple pathways of DNA repairs. Short patch BER, a pathway to repair many damaged bases, is initiated by damage-pecific DNA glycosylase that removes the damaged base. The arising apurinic/apyrimidinic site (AP site) is recognized by AP endonuclease (APE) that incises the phosphodiester bond 5' next to the AP site, followed by addition of one nucleotide to the 3'-OH end of the incised AP site and excision of the 5'-deoxyribosephosphate by DNA polymerase β (pol β). Finally, DNA ligase completes repair by sealing the DNA ends. XRCC1 has no known enzymatic activity and is thought to act as a scaffold protein of this pathway. We have shown that methylpurine glycosylase (MPG) interacts with APE, APE interacts with pol β, and that DNA glycosylase activities are reduced in pol β deficient cell.
In this study, we examined the effect of APE and pol β on MPG activity under single-turnover condition, where the numbers of oligodeoxyribonucleotides including Hypoxanthine and MPG molecules are nearly equal. About 1.53- and 1.43-fold higher of MPG enzymatic activity was observed in the presence of APE and pol &beta, respectively. Moreover, in the presence of both APE and pol β, MPG activity was more significantly enhanced than in the presence of either APE or pol β. These data indicate the possibility that pol β directly influences enzymatic activity of MPG.
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Hiroyuki KUSAKA, Satoshi MATSUYAMA, Hideaki MASATSUGU, Ryohei YAMAMOTO ...
Session ID: P1-33
Published: 2006
Released on J-STAGE: March 13, 2007
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Base excision repair (BER) is initiated with excision of damaged bases by DNA glycosylases. DNA glycosylase NEIL1 is a homolog of
E. coli endonuclease VIII and identified in human and mouse cells. In only mouse cells, a couple of variants of Neil1 mRNA have been reported. Putative “NEIL1 protein (NCBI AAH43297)” mRNA (variant1) has shorter nucleotide sequence than NEIL1. Putative “unnamed protein (NCBI BAC30707)” mRNA (variant2) has a stop codon at the 436th of variant1 and 10 bases insert just after the codon. However, there is no report about functions of these variants. In this study, we constructed expression systems of these variants and examined activities of recombinant proteins. To do cloning of variants genes, we examined expression of mRNA of variants in various mouse organs. We performed RT-PCR with primer set 1, which amplify NEIL1 and variant1, and primer set 2 to amplify NEIL1, variant1, and variant2. Expression of either NEIL1 or variant1 was observed in brain, heart, liver, and kidney. On the other hand, amplification products were only observed using primer set 2 with RNA samples from lungs, stomach, and spleen suggesting only variant2 expresses in these organs. We constructed expression systems of these variants and the characterization of these recombinant proteins is in progress.
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Kenta IIJIMA, Chizuko MURANAKA, Junya KOBAYASHI, Shuichi SAKAMOTO, Ken ...
Session ID: P1-34
Published: 2006
Released on J-STAGE: March 13, 2007
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Nijmegen breakage syndrome (NBS) is characterized by hyper-sensitivity to ionizing radiation, high frequency of chromosomal aberration, and high incidence of malignancy. NBS1, the underlying protein for NBS, form a complex with MRE11/RAD50 (M/R), and plays a crucial role in DNA repair processes by regulating the M/R activities and localization. NBS1 complex are also involved in DNA damage signaling, such as cell cycle checkpoint activation and apoptosis induction, through regulation of ATM activation and localization. Using hyper-recombinogenic DT40 cells, we found that apoptosis induction after irradiation was significantly suppressed in Nbs1 knockout cells compared to wild type cells. Because p53 expression was lost in DT40 cells, our observation suggests that Nbs1 might be involved in apoptosis induction pathway that is independent of p53. Our further analysis suggested that NBS1 regulates not only early stage of DNA damage signaling but also late stage triggering apoptosis.
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Kyosuke NAKAMURA, Shuichi SAKAMOTO, Kenta IIJIMA, Daisuke MOCHIZUKI, K ...
Session ID: P1-35
Published: 2006
Released on J-STAGE: March 13, 2007
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The proteins responsible for radiation sensitivity disorders, NBS1, ATM and MRE11, interact through the C-terminus of NBS1 in response to the generation of DNA double strand breaks (DSB), and are all implicated in checkpoint regulation and DSB repair. To gain insights into the mechanistic role of NBS1 in homologous recombination (HR) and the possible relevance of ATM and MRE11 to this process, we generated a series of human NBS1 mutant cDNAs and measured their ability to regulate HR repair using the DR-GFP or SCneo systems. The HR-regulating ability of NBS1 is dramatically reduced by deletion of the MRE11-binding domain at the C-terminus of NBS1, and markedly inhibited by mutations in the FHA/BRCT domains at the N-terminus. This impaired capability in HR is consistent with a failure to observe MRE11 foci formation at damaged sites after transfection of NBS cells with these mutants. In contrast, HR frequencies are only slightly affected by mutations in the serine residues phosphorylated by ATM in response to DSB, or by deletion of ATM binding site at the extreme C-terminus. This was confirmed by findings that ATM deficiency did not reduce the HR repair frequency of an induced DSB, although ATM itself and the ATM-binding domain on NBS1 are essential for regulation of intra-S phase checkpoint. These results suggested that the N- and C-terminal domains of NBS1 are the major regulatory domains for HR pathways, very likely through the recruitment and retention of the MRE11 nuclease to DSB sites in an ATM-independent fashion.
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Soh MORISHITA, Toshiaki NAKANO, Atsushi KATAFUCHI, Nagisa MATOBA, Yusu ...
Session ID: P1-36
Published: 2006
Released on J-STAGE: March 13, 2007
CONFERENCE PROCEEDINGS
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DNA-protein cross-links (DPCs) are produced by ionizing radiation, ultraviolet, aldehydes, and chemotherapeutic platinum compounds. DPCs would inhibit DNA replication and transcription by the steric hindrance of cross-linked proteins and hence exert adverse effects on cells. However, the repair mechanism of DPCs remains largely unknown. In the present study, we have examined the sensitivity of Escherichia coli cells to DPC-inducing agents to elucidate the repair mechanism of DPCs. To dissect repair pathways, Escherichia coli strains deficient in nucleotide excision repair (uvrA), recombinational repair (recA), and translesion synthesis (umuDC) were used. Cells were treated with formaldehyde or 5-azacytidine, and survival was measured by colony formation. It is known that formaldehyde produces a covalent linkage between amino groups of a DNA base and protein and that 5-azacytidine is metabolized and incorporated into DNA to produce a covalent linkage between 5-azacytosine and deoxycytidine methyltransferase. When cells were treated with formaldehyde, the survival fractions of uvrA and recA mutants but not a umuDC mutant were significantly lower than that of the wild type. In contrast, a recA mutant but not uvrA and umuDC mutants exhibited sensitivity to 5-azacytidine. These results suggest that DPCs formed by formaldehyde are repaired by both nucleotide excision and recombinational repair pathways, whereas DPCs formed by 5-azacytidine are repaired predominantly by the recombinational repair pathway.
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Toshiaki NAKANO, Soh MORISHITA, Hiroaki TERATO, Pack SEUNG PIL, Houten ...
Session ID: P1-37
Published: 2006
Released on J-STAGE: March 13, 2007
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Ionizing radiation produces oxidized bases and strand breaks as major DNA lesions. In addition, ionizing radiation also generates DNA-protein cross-links (DPCs) and interstrand cross-links. However, repair mechanisms of cross-linked lesions largely remain to be elucidated. We have shown previously that oxanine, a deamination product of guanine, reacts with polyamines and DNA binding proteins such as histone and DNA glycosylases, giving rise to DPCs. Furthermore, cross-link products between oxanine and spermine are excised from DNA by prokaryotic and eukaryotic nucleotide excision repair (NER) systems. DPCs bear large protein molecules and hence could hamper the access and/or assembly of NER proteins. In the present study, we have assessed the damage recognition and excision capacities of the NER system for DPCs using UvrABC nuclease. Oxanine was site-specifically incorporated into oligonucleotides and cross-linked to proteins of varied sizes. DPC-DNA was incubated with UvrABC, and incision products were analyzed by denaturing PAGE. DPC-DNA was also incubated with UvrAB, and the formation of DNA-protein complex was analyzed by native PAGE. The dual incision activity of UvrABC for DPC-DNA varied significantly depending on the size of cross-linked proteins. The efficiency of DNA-UvrB complex formation was also dependent on the size of cross-linked proteins. These results indicate that the damage recognition step by UvrA2B is key to the excision of DPCs by UvrABC nuclease.
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Mikio SHIMADA, Junya KOBAYASHI, Hiroshi TAUCHI, Kenshi KOMATSU
Session ID: P1-38
Published: 2006
Released on J-STAGE: March 13, 2007
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DNA double strand breaks(DSBs) are generated within genome DNA by exposure to ionizing radiation and certain chemicals. There are two pathways, in which DNA double strand breaks are rejoined, non-homologous end joining (NHEJ) and homologous recombination (HR). Ataxia telangiectasia like disorders (ATLD), characterized by hyper sensitivity to ionizing radiation(IR), immunodeficiency and an increased preposition to the development of malignancies, is phenotypically similar to ataxia telangiectasia (AT). hMRE11, the protein responsible of this disease, plays an important role in HR repair, and the N-terminal nuclease domain is widely conserved in eukaryote. hMRE11 forms the complex with NBS1 and hRAD50 and also function in miosis and S-phase checkpoint. Recently, it was reported that hMRE11 is methylated and phosphorylated, meaning of these modification in the DNA damage checkpoint response and DNA repair is unclear.
Therefore, we generated the several hMRE11 constructs mutated at methylation or phosphorylation sites and we investigated the role of HR repair using the DR-GFP reporter assay. Moreover, we also examine the effect of these hMRE11 modification on NBS1 by immunoprecipitation and immunofluorescence.
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Satoshi KITAZAWA, Satoshi NAKAJIMA, Tsukasa MATSUNAGA, Shunsuke KATO, ...
Session ID: P1-39
Published: 2006
Released on J-STAGE: March 13, 2007
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p53 becomes activated after DNA damage and prevents cells from getting cancer by initiating cell cycle arrest or apoptosis. However, it is not well known about how p53 responds to DNA damage. To understand the mechanism of p53 response to DNA damage and its function, we have used
in situ visualization analysis whose experimental system has been developed in our laboratory. We have introduced various types of damage at restricted nuclear regions of mammalian cells by irradiation with UVA laser through a microscope lens, and investigated the dynamics of p53. We expressed GFP-fused p53 in human cells and irradiated UVA laser in the nucleus of the cell. We found that p53 accumulated rapidly at the irradiated site. We generated p53 deletion constructs, which lack N-terminus or C-terminus of p53 and it turned out that the region between 102-354 amino acids including DNA binding domain and tetramerization domain is the minimal domain of p53 that is necessary for accumulation. Whereas point mutants defective in tetramer formation accumulated as well as the wild type p53, point-mutated p53 with lower DNA binding activity did not accumulate at the site of laser irradiation. From these data, we concluded that p53 accumulation is independent of p53 tetramer formation, but dependent on the ability of DNA binding. In addition, almost all of hot spot point mutants, identified as highly frequent in cancer patients, did not accumulate. These results suggest that there may be an important relationship between the inability of p53 accumulation at DNA damage and carcinogenesis.
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Kentaro ARIYOSHI, Seiji KODAMA, Kazunori SHIRAISHI, Keiji SUZUKI, Mako ...
Session ID: P1-40
Published: 2006
Released on J-STAGE: March 13, 2007
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Werner syndrome (WS) is an autosomal recessive disorder whose phenotype mimics premature aging. This syndrome is caused by mutations in WRN, a member of the RecQ DNA helicase family, of which biological function remains unclear. In the present study, we investigated the relationship between WRN protein deficiency and telomere dysfunction in WS cells. WS cells showed 10-fold more dicentrics than normal cells when they are examined in culture at similar senescence level monitored by senescence-associated β-galactosidase positive ratio, suggesting the constitutive telomeric instability in WS cells. Therefore, we examined telomere stability in Ws cells by telomere FISH, and found that there were two abnormal signals, extra telomere signals (ETS) and loss of telomere signals (LTS), emerged spontaneously in normal and WS cell metaphases. The results indicated that the frequencies of ETS and LTS were 2-fold higher in WS cells than in normal cells and that the frequency of ETS was elevated by the treatment with hydrogen peroxide, indicating that ETS is produced in response to the oxidative stress and that telomeres in WS cells are sensitive to the oxidative stress. However, the numbers of DNA double strand breaks detected by phosphorylated ATM foci at telomeres were much lower than those of ETS in both normal cells and WS cells, suggesting that double strand breaks are not involved in the production of ETS. The present study suggests that WRN protein functions to protect telomeres from damage by intracellular oxidative stress.
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