JSBi Bioinformatics Review

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Primers

Basics of nonnegative matrix factorization (NMF): a useful tool for revealing intuitive patterns

Takuma Tanaka

2026Volume 7Issue 1 Pages 1-7
Published: 2026
Released on J-STAGE: June 01, 2026

DOIhttps://doi.org/10.11234/jsbibr.2026.primer1

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Genotype-to-Phenotype Modeling of Viral Proteins for Predicting Viral Epidemics and Evolution

Jumpei Ito

2026Volume 7Issue 1 Pages 8-14
Published: 2026
Released on J-STAGE: June 01, 2026

DOIhttps://doi.org/10.11234/jsbibr.2026.primer2

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Review

Development and Applications of Protein Language Models

Kairi Furui, Masahito Ohue

2026Volume 7Issue 1 Pages 15-30
Published: 2026
Released on J-STAGE: June 01, 2026

DOIhttps://doi.org/10.11234/jsbibr.2026.1

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Mathematics for Heterogeneous Biological Data Fusion Analysis with Matrix-Tensor Factorization

―Part VIII. Survival Analysis―

Koki Tsuyuzaki

2026Volume 7Issue 1 Pages 31-41
Published: 2026
Released on J-STAGE: June 01, 2026

DOIhttps://doi.org/10.11234/jsbibr.2026.2

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Representative Strategies for de novo Draft Genome Assembly in Non-Model Eukaryotes

Koh Nakagawa, Nobuaki Kono

2026Volume 7Issue 1 Pages 42-57
Published: 2026
Released on J-STAGE: June 01, 2026

DOIhttps://doi.org/10.11234/jsbibr.2026.3

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Medical Data Analysis Methods: Examples from Gene Expression and Histopathological Image

Haruhisa Oda

2026Volume 7Issue 1 Pages 58-66
Published: 2026
Released on J-STAGE: June 01, 2026

DOIhttps://doi.org/10.11234/jsbibr.2026.4

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Sequence analysis revisited from FFT and inner product spaces:

From MAFFT to Genetic Geometry

Kazuharu Misawa

2026Volume 7Issue 1 Pages 67-77
Published: 2026
Released on J-STAGE: June 01, 2026

DOIhttps://doi.org/10.11234/jsbibr.2026.5

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