Journal of Structural and Functional Genomics
Online ISSN : 1345-711X
ISSN-L : 1345-711X
Volume 1, Issue 4
Displaying 1-1 of 1 articles from this issue
  • Nobuhisa Shimba, Eri Kariya, Shin-ichi Tate, Hiroyuki Kaji, Masatsune ...
    Article type: Others
    Subject area:  
    2000 Volume 1 Issue 4 Pages 26-42
    Published: 2000
    Released on J-STAGE: June 11, 2001
    JOURNAL FREE ACCESS
    The effect of substituting Pro25, located in the a-helical region of the cystatin A structure, with Ser has been studied. The structures of wild type and P25S cystatin A were determined by multidimensional NMR spectroscopy under comparable conditions. These two structures were virtually identical, and the a-helix between Glu15-Lys30 exists with uninterrupted continuity, with a slight bend at residue 25. In order to characterize the possible substitution effects of Pro25 with Ser on the a-helix, the chemical shifts of the amide nitrogens and protons, the generalized order parameters obtained by the analyses of the 15N-1H relaxation data, the amide proton exchange rates, and the NOE networks among the a-helical and surrounding residues were carefully compared. None of these parameters indicated any significant static or dynamic structural differences between the a-helical regions of the wild-type and P25S cystatin A proteins. We therefore conclude that our previous structure of the wild-type cystatin A, in which the a-helix exhibited a sharp kink at Pro25, must be revised. The asymmetric distribution of hydrophobic interactions between the side-chain residues of the a-helix and the rolled b-sheet surface, as revealed by NOEs, may be responsible for the slight bend of the a-helix in both variants and for the destabilized hydrogen bonding of the a-helical residues that follow Pro25/Ser25, as evidenced by increased amide exchange rates.
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