Amami archipelago is an important area for biodiversity conservation because it is home to many endangered animals such as Amami rabbit, spiny rat, and Ryukyu long-furred rat. However, non-native species such as the domestic cat, black rat, and giant African snail have become widely established and have had negative impact on these ecosystems. In this study, we constructed a database of parasitic organisms in wildlife of Amami-Oshima and Tokunoshima islands in order to estimate the factors causing damage to the ecosystem by pathogens. As a result, the number of reported cases of eukaryotes (excluding fungi and dipteran species) was 153 in mammals, 28 in birds, 54 in reptiles, 15 in amphibians. The pathogens reported included 41 acarids, 47 nematodes, 10 protozoans, 14 trematodes, and 17 cestodes. Among these, transmission of pathogens from non-native animals to domestic species was observed in Toxoplasma gondii, Angiostrongylus cantonensis, Hydatigera taeniaeformis, and Spirometra erinaceieuropaei. In addition, we performed histopathological examinations of specimens from injured individuals and individuals found dead, and attempted to identify the pathogens obtained. We found a protozoan infection suspected to be T. gondii in brain, and three novel intestinal protozoans, Eimeria furnessi, E. hilleri, and E. sagentae, in Amami rabbits. In addition, a variety of parasitic organisms were detected in birds.
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