Analytical Sciences
Online ISSN : 1348-2246
Print ISSN : 0910-6340
ISSN-L : 0910-6340
Original Papers
Synthesis of Circular Double-Stranded DNA Having Single-Stranded Recognition Sequence as Molecular-Physical Probe for Nucleic Acid Hybridization Detection Based on Atomic Force Microscopy Imaging
Koji NAKANOHideshi MATSUNAGAMasaharu MURATANobuaki SOHToshihiko IMATO
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ジャーナル フリー

2009 年 25 巻 8 号 p. 993-998

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抄録
A new class of DNA probes having a mechanically detectable tag is reported. The DNA probe, which consists of a single-stranded recognition sequence and a double-stranded circular DNA entity, was prepared by polymerase reaction. M13mp18 single strand and a 32mer oligodeoxynucleotide whose 5′-end is decorated with the recognition sequence were used in combination as template and primer, respectively. We have successfully demonstrated that the DNA probe is useful for bioanalytical purposes: by deliberately attaching target DNA molecules onto Au(111) substrates and by mechanically reading out the tag-entity using a high-resolution microscopy including atomic force microscopy, visualization/detection of the individual target/probe DNA conjugate was possible simply yet straightforwardly. The present DNA probe can be characterized as a 100%-nucleic acid product material. It is simply available by one-pod synthesis. A surface topology parameter, image roughness, has witnessed its importance as a quantitative analysis index with particular usability in the present visualization/detection method.
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© 2009 by The Japan Society for Analytical Chemistry
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