Journal of Computer Chemistry, Japan
Online ISSN : 1347-3824
Print ISSN : 1347-1767
ISSN-L : 1347-1767
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Investigation of a Virtual Nested Two-dimensional Lattice Model for Representing the Diffusive Motion of a Transmembrane Protein in Cell Membrane
Atsushi OKUMOTOTomonari SUMIHideo SEKINOHitoshi GOTO
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2016 年 15 巻 6 号 p. 229-231

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As a refinement of the fluid mosaic model for explaining cell membrane functions, membrane-skeleton fence model and anchored membrane protein picket model have been proposed according to the tracing experiment of a single molecule in plasma membrane. In addition, the experimental observation that the diffusive motion of a transmembrane protein in plasma membrane leads to a normal diffusion through two-step relaxation has suggested that there are two types of nested compartments, large and small. In this paper, we propose a virtual nested two-dimensional lattice model that can express a nested compartment structure of plasma membrane using three parameters in order to represent such a single molecule diffusion movement. Using this 2D lattice model, various diffusive motion simulations of one particle random walks were performed and their trajectories were analyzed by Detrended fluctuation analysis. As a result, we have confirmed that both plasma membrane models, "fence" and "picket," can be represented by our virtual nested 2D lattice model.

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© 2017 Society of Computer Chemistry, Japan
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