The effect of tool geometry on microstructure and static strength in friction stir spot welds of 6061 aluminium alloy sheets was studied. Tools with three different probe lengths were evaluated. The weld microstructures varied depending on probe length, tool rotational speed and tool holding time. Two particular aspects in the microstructures were identified: the thickness of the upper sheet under the shoulder indentation and the actual nugget size. The tensile shear strength increased with increasing probe length, while the cross tension strength was not affected significantly by probe length. Two fracture modes were observed in both tensile shear and cross tension tests. The dependence of static strength on probe length and the fracture mechanisms were discussed based on observation of the microstructures.