2024 Volume 65 Issue 2 Pages 79-85
Caeoma mori (≡ Aecidium mori), known as the mulberry rust which is an anamorphic rust fungus forming only aecidioid uredinia, were found on Morus alba in Ibaraki and Saitama Prefectures, Japan. Molecular phylogenetic analyses using the combined dataset of sequences from 28S and 18S of the nuclear ribosomal RNA gene and Cytochrome-c-oxidase subunit 3 of the mitochondrial DNA revealed that this anamorphic rust fungus was a member of the clade composed of the genus Gymnosporangium. Therefore, a new combination, Gymnosporangium mori is proposed for this species. Additionally, a new combination, G. brucense for Roestelia brucensis is proposed by phylogenetic evidence.
Mulberry (Morus, Moraceae) is shrubs or trees consisting of about 10 species, and mainly distributed in temperate regions of Asia and North America (Nepal & Ferguson, 2012). The leaves of these plants are used as foods for silkworm larvae. Some species are also cultivated for productions of edible fruits. Specimens of a rust fungus occurred on shoots and leaves of Morus alba L. (common mulberry or silkworm mulberry) were collected in the fields of Ibaraki and Saitama Prefectures, Japan in early summer of 2021 and 2023 (Fig. 1A). Morphological observations were made for the identification of this rust fungus using light microscopy and scanning electron microscopy by the same methods reported by Uzuhashi et al. (2022). Spermogonia were not found on specimens. Sori surrounded with fragile and short peridia (Fig. 1B, D, E) were amphigenous, densely formed, rounded to elliptical and cupulate. Peridial cells were loosely conjunct and their inner walls were verrucose. Spores (Fig. 1C, F) were catenulate, angularly globose to ellipsoid and 11.5-20 × 8-15.5 μm (avg. 16 × 12 µm; n = 50) in size. Their walls were hyaline, verrucose and 1-1.5 μm thick.
Five species of rust fungi, Phakopsora fici-erectae S. Ito & Y. Otani ex S. Ito & Muray., Cerotelium fici (Castagne) Arthur, Aecidium mori (Barclay) Barclay (≡ Caeoma mori Barclay), Uredo moricola Henn. and U. morifolia Sawada have been reported on species of Morus in Japan (Hiratsuka et al., 1992; Ito, 1950). Among them sorus structures of P. fici-erectae, C. fici, U. moricola and U. morifolia are different from the rust fungus collected on M. alba in Ibaraki and Saitama Prefectures. Namely, P. fici-erectae and C. fici has peripheral paraphyses in sori and two Uredo species have no peridium in their sori. Sorus structures of this rust fungus having fragile peridia is identical with descriptions of A. mori (Hiratsuka et al., 1992; Ito, 1950; Mordue, 1991). The morphology and size of spores are also similar to those of its descriptions. Therefore, the present rust fungus on M. alba is identified as A. mori. Specimens used in this observation were deposited in the Mycological Herbarium of the Department of Botany, National Museum of Nature and Science, Tsukuba, Japan (TNS).
Caeoma mori was originally described as a rust fungus on mulberry in 1890 by Barclay. Although this species was recorded as Uredo mori (Barclay) Sacc. in 1891 by Saccardo, Barclay (1891) treated this species as same species as A. mori, described by himself, because of the presence of peridia in the sori. Aecidium mori has been widely recorded on many species of Morus and Broussonetia (Moraceae) in Asia (Hiratsuka et al., 1992; Ito, 1950; Mordue, 1991; Tai, 1979). Sori and spores of this species are morphologically as same as Aecidium-type by Cummins and Hiratsuka (1983) because of catenulate spores and presence of peridia. Therefore, spores are morphologically categorized as aeciospores which are usually produced after spermogonial formation and produce uredinia after their infections to plants. However, no spermogonium is formed and same type of sori (Aecidium-type) is produced repeatedly after infections with these spores (Kaneko, 1973). This type of sori is called as aecidioid uredinia or uredinial aecia (Kaneko, 1973; Kasuya et al., 2020; Sato & Sato, 1981). Therefore, spores of this species are functionally as same as urediniospores of rust fungi.
Sathe (1969) described a new anamorphic genus, Peridiopsora Kamat & Sathe for rust fungi producing urediniospores in Aecidium-type sori, and A. mori was transferred to this genus as P. mori (Barclay) K.V. Prasad, B.R.D. Yadav & Sullia by Prasad et al. (1993). However, A. mori has been commonly used as species name of mulberry rust in the world. Because only anamorphic stage of this rust fungus has been known, its taxonomic position among rust fungi has been unknown for long time. Recently, Aime and McTaggart (2021) suggested that this species was phylogenetically close to Gymnotelium Syd. described for group of the genus Gymnosporangium R. Hedw. ex DC. having Aecidium-type of aecia, but their analyses was insufficient.
In the present study, to clarify the taxonomic position of A. mori, the phylogenetic analyses reported by Aime and McTaggart (2021) was applied. We obtained sequence data of the large subunit (28S) and the small subunit (18S) of the nuclear ribosomal RNA gene and Cytochrome-c-oxidase subunit 3 (CO3) of the mitochondrial DNA from specimens of A. mori which were collected from Ibaraki and Saitama Prefectures and used for morphological observations. Procedures of DNA extraction, PCR and sequencing followed the method reported by Virtudazo et al. (2001), Kasuya et al. (2012) and Aime and McTaggart (2021). 28S ribosomal RNA was amplified with Rust2INV (Aime, 2006)/LR6 or LR7 (Vilgalys & Hester, 1990) and, for weak products, nested with Rust28SF (Aime et al., 2018)/LR5 or LR6 (Vilgalys & Hester, 1990). 18S ribosomal RNA was amplified with NS1 (White et al., 1990)/Rust 18S-R (Aime, 2006) and nested with RustNS2-F (Aime et al., 2018)/NS6 (White et al., 1990). The mitochondrial CO3 was amplified with CO3_F1/CO3_R1 (Vialle et al., 2009). DNA extraction, PCR and sequencing were mainly performed by TechnoSuruga Laboratory Co. Ltd. (Shizuoka, Japan).
A total of eight 28S, seven 18S and six CO3 sequences from eight specimens of A. mori were newly generated and used for the phylogenetic analyses. These sequences were deposited to the International Nucleotide Sequence Databases (INSD; Table 1). Phylogenetic analyses were conducted for the combined dataset of 28S, 18S and CO3 sequences under maximum likelihood (ML) and Bayesian inference (BI). The combined dataset of the three loci (Table 1) included 57 taxa with Puccinia boroniae Henn. used as the outgroup according to the result of phylogenetic analyses of Uredinineae Engl. by Aime and McTaggart (2021) since Pucciniaceae Chevall. has phylogenetically close relationship to Gymnosporangiaceae Chevall. A total of 48 28S, 40 18S and 10 CO3 sequences of ingroups obtained from the NCBI GenBank databases (https://www.ncbi.nlm.nih.gov/) were chosen from Gymnosporangiaceae and Sphaerophragmiaceae Cummins & Y. Hirats. based on the analyses by Zhao et al. (2020) and Aime and McTaggart (2021). The combined dataset was aligned using Muscle v.3.6 (Edgar, 2004a, 2004b), followed by manual alignment in the data editor of BioEdit ver. 7.0.1 (Hall, 1999). Hypervariable, indel-rich and ambiguously aligned regions were removed from the analyses, and gaps were scored as missing data. The final alignments were deposited in TreeBASE (https://treebase.org) under the accession number S30671.
Species a | Voucher specimen numbers | Locality | INSD accession numbers b | ||
28S | 18S | CO3 | |||
Austropuccinia psidii | BRIP 57793 | Australia, Queensland, Brisbane | KF318449 | KF318457 | KT199419 |
Dasyspora guianensis | ZT Myc 3413 | French Guiana | JF263479 | JF263503 | JF263519 |
D. nitidae | ZT Myc 3409 | French Guiana | JF263484 | JF263505 | JF263521 |
D. segregaria | PMA MP4941 | Panama | JF263488 | JF263507 | JF263523 |
Gymnosporangium asiaticum | IBAR 5704 | Japan | KJ720161 | KJ720161 | n/a c |
G. asiaticum | TNM F0027942 | Taiwan, Taichung, Dongshi | KP308393 | KP308393 | n/a |
G. brucense | DAOM 127906 | Canada, Ontario, Ottawa | KJ720188 | KJ720188 | n/a |
G. brucense | RSP 74-313 | Mexico | KJ720189 | n/a | n/a |
G. clavariiforme | RSP 05-32 | USA, New Mexico | KJ720164 | KJ720164 | n/a |
G. clavariiforme | BRIP 59471 | Australia | MW049261 | MW049296 | MW036499 |
G. clavipes | BPI 871102 | USA | DQ354545 | DQ354546 | n/a |
G. clavipes | NYBG 461394 | USA | MN605691 | MN604977 | n/a |
G. clavipes | CUP A-18207 | USA, New York | MN605692 | MN604978 | n/a |
G. confusum | DAOM 220748 | Canada | KJ720165 | KJ720165 | n/a |
G. cupressi | RSP 99-98 | USA, Arizona | KJ720169 | KJ720169 | n/a |
G. ellisii | YPM RN23 | USA, North Carolina | KJ720156 | KJ720156 | n/a |
G. exiguum | RSP 04-86 | USA, California | KJ720170 | KJ720170 | n/a |
G. globosum | CUP 1553 | USA, New York | MN605698 | MN604983 | n/a |
G. globosum | NYBG 237038 | USA, | KU342738 | MN604982 | n/a |
G. juniperi-virginianae | RSP 98-137 | USA, Oklahoma | KJ720176 | KJ720176 | n/a |
G. juniperi-virginianae | MCA 3585 | USA | MG907217 | MG917687 | MG907268 |
G. kernianum | RSP 05-37 | USA, Texas | KJ720177 | KJ720177 | n/a |
G. libocedri | TDB 1519 | USA | AF522168 | AY123290 | n/a |
G. libocedri | PUR N10018 | USA | MG907218 | MG907206 | MG907269 |
G. libocedri | HMAS 49246 | USA, California | MN605717 | MN605009 | n/a |
G. libocedri | HMAS 45643 | USA | MN605718 | MN605010 | n/a |
G. libocedri | GL3_3 | Canada | OR567878 | n/a | n/a |
G. libocedri | GL4_6 | Canada | OR568568 | n/a | n/a |
G. libocedri | GL2_1 | Canada | OR654105 | n/a | n/a |
G. mori | PUR N11676 | Taiwan, Taipei | MW147025 | n/a | MW166323 |
G. mori | TNS-F-99251 (Epitype) | Japan, Ibaraki, Joso, Tategeta | OR415605 | OR415613 | OR423360 |
G. mori | TNS-F-99252 | Japan, Ibaraki, Joso, Moto-toyoda | OR415606 | n/a | n/a |
G. mori | TNS-F-108304 | Japan, Ibaraki, Tsukuba | OR415607 | OR415614 | n/a |
G. mori | TNS-F-99265 | Japan, Ibaraki, Joso, Tategata | OR415608 | OR415615 | OR423361 |
G. mori | TNS-F-99266 | Japan, Ibaraki, Shimotsuma | OR415609 | OR415616 | OR423362 |
G. mori | TNS-F-99267 | Japan, Saitama, Kitamoto | OR415610 | OR415617 | OR423363 |
G. mori | TNS-F-99268 | Japan, Saitama, Kawajima, Demaru-nakago | OR415611 | OR415618 | OR423364 |
G. mori | TNS-F-99269 | Japan, Saitama, Kawajima, Demaru-shimogo | OR415612 | OR415619 | OR423365 |
G. multiporum | RSP 05-31 | USA, New Mexico | KJ720179 | KJ720179 | n/a |
G. nidus-avis | RSP 05-29 | USA, New Mexico | KJ720181 | KJ720181 | n/a |
G. nidus-avis | NYBG 237080 | USA | KU342757 | MN605019 | n/a |
G. nidus-avis | NYBG 461234 | USA | KU342758 | MN605015 | n/a |
G. niitakayamense | TNM F0027945 | Taiwan, Nantou, Ren’ai | KP308396 | KP308396 | n/a |
G. niitakayamense | TNM F0027946 | Taiwan, Hualien, Sioulin | KP308397 | KP308397 | n/a |
G. nootkatense | PUR 63656 | Canada | KJ720159 | KJ720159 | n/a |
G. raphiolepidis | TNS-F-79706 | Japan, Chiba, Choshi | MT419964 | n/a | n/a |
G. raphiolepidis | TNS-F-70764 | Japan, Chiba, Choshi | MT419965 | n/a | n/a |
G. raphiolepidis | TNS-F-70765 | Japan, Ibaraki, Kamisu | MT419966 | n/a | n/a |
G. sabinae | TUB RB2066 | Germany | AY512845 | n/a | n/a |
G. sabinae | TNM F0030477 | Bulgaria, Sofia | KY964764 | KY964764 | n/a |
G. sabinae | CUP 0477 | USA | MN605721 | MN605022 | n/a |
G. speciosum | RSP 99-96 | USA, Arizona | KJ720160 | KJ720160 | n/a |
G. tsingchenense | HMAS 133735 | China | n/a | MN605032 | n/a |
G. vauqueliniae | RSP 05-87 | USA, Arizona | KJ720186 | KJ720186 | n/a |
Puccinia boroniae | BPI 57810 | Australia | MW147045 | MW147074 | MW139655 |
Puccorchidium polyalthiae | ZT HeRB 251 | n/a | JF263493 | JF263509 | JF263525 |
Sphaerophragmium acaciae | BRIP 56910 | Australia, Western Australia, Kununurra | KJ862350 | KJ862429 | KJ862462 |
S. longicorne | PUR N16513 | Nigeria, Abor, Enugu | MW147053 | MW147077 | n/a |
a Sequences newly generated in the present study are shown in bold.
b The International Nucleotide Sequence Databases (INSD) accession numbers for the large subunit (28S) and the small subunit (18S) of the nuclear ribosomal RNA gene and Cytochrome-c-oxidase subunit 3 (CO3) of the mitochondrial DNA sequences. Identical accession numbers for 28S and 18S indicate a single rDNA sequence containing both regions.
c “n/a” means unavailable information.
ML analysis was performed using IQ-TREE v.1.6.12 (Nguyen et al., 2015). According to determine the lowest Bayesian information criterion scores (25315.04) by IQ-TREE, the GTR+F+I+G4 model was chosen as the best-fit evolutional model for the analysis of the combined 28S, 18S and CO3 dataset. For the ML analysis, clade robustness was assessed using the Shimodaira-Hasegawa-like approximate likelihood ratio test (SH-aLRT; Guindon et al., 2010) and ultrafast bootstraps (UFBoot; Hoang et al., 2018) with 10000 replicates, respectively. BI analysis was performed using MrBayes version 3.2.7 (Ronquist et al., 2012) based on the same method of Kasuya and Ono (2018). The GTR+I+G model was selected as the best evolutionary model for the combined dataset by the hierarchical likelihood-ratio test using MrModeltest2 (Nylander, 2004). The support of nodes was tested by posterior probabilities (BPP), obtained from a 50% majority rule consensus after deleting the trees in the burn-in period.
The combined dataset of 283, 18S and CO3 had an aligned in length of 3371 characters including gaps, of which 2090 constant and phylogenetically uninformative, and 1281 phylogenetically informative. The highest log likelihood of the resulting ML tree of the combined dataset of the three loci was -12124.92. By BI, after 850,000 generations of Markov chain Monte Carlo runs, the analysis reached stationarity: the average standard deviation of split frequencies dropped below 0.01 after 405,000 generations. After discarding the burn-in phase, the trees had a likelihood score (harmonic mean) of -12304.44 with the potential scale reduction factor of 1.000 for all parameters, indicating that the analyses were run for a sufficient number of generations. The ML and BI analyses resulted in trees that were almost identical in topology. Hence, only the ML tree topology of the combined 28S, 18S and CO3 dataset is shown in Fig. 2.
By ML and BI analyses, 28S, 18S and CO3 sequences generated from specimens of A. mori were placed within a strongly supported clade [SH-aLRT(%)/UFBoot (%)/BPP = 100/100/1.00]. It was included into the major clade comprising Gymnosporangium, but clearly distinct from the other species (Fig. 2). This clade was phylogenetically close to G. libocedri (Henn.) F. Kern [= Gymnotelium blasdaleanum (Dietel & Holw.) Arthur] and G. ellisii (Berk.) Berk. [= Gymnotelium myricatum (Schwein.) Arthur] (Fig. 2). These two species have Aecidium-type of aecia, and species of Gymnosporangium producing this type of aecia were taxonomically separated as Gymnotelium because aecial structures were different from the other species of Gymnosporangium (Roestelia-type of Cummins & Hiratsuka, 1983) (Aime & McTaggart, 2021). Although Cummins and Hiratsuka (1983) treated Gymnotelium as a synonym of Gymnosporangium, Aime and McTaggart (2021) suggested Gymnotelium as an independent genus from Gymnosporangium based on its morphology, phylogeny and host plants. They also indicated that morphological similarities of A. mori (≡ P. mori) with Gymnotelium. However, species of Gymnosporangium having Aecidium-type and Roestelia-type of aecia are scattered in our phylogenetic trees and species having each type do not make monophyletic group (Fig. 2). Results of the present analyses are also supported by phylograms of Gymnosoprangium on Malus reported by Zhao et al. (2020). Moreover, results of our phylogenetic analyses (Fig. 2) strongly support the monophyly of Gymnosporangium including G. sabinae (Dicks.) G. Winter (= G. fuscum DC.), the type species of the genus [SH-aLRT(%)/UFBoot (%)/BPP = 87/95/1.00]. Simultaneously the present phylogram shows species hitherto recognized as Gymnotelium [G. nootkatense (Trel.) Arthur (≡ Gymnotelium nootkatense (Trel.) Syd., the type species of Gymontelium), G. speciosum Peck (≡ Gymnotelium speciosum (Peck) Aime & McTaggart), G. libocedri and G. ellisii] are paraphyletic and do not form independent clade (Fig. 2). Therefore, we consider that Gymnotelium is included into Gymnosporangium.
From above phylogenetic analyses it is concluded that A. mori should be treated as a new member of Gymnosporangium although it produces only one stage of life cycle (aecidioid uredinia or uredinoid aecia). It is suspected that this species may be differentiated from aecial stage of Gymnosporangium having heteroecious life cycles and has changed function of its aeciospores to urediniospores for its survival (Cummins & Hiratsuka, 1983; Leppik, 1972), similar to G. raphiolepidis reported by Kasuya et al. (2020).
Caeoma mori is a legitimate earliest name for A. mori under ICN Shenzhen Code (Art. F.8, Turland et al., 2018). However, the application of an anamorphic genus name, Caeoma Link or Aecidium Pers. to a teleomorphic genus name, Gymnosporangium which is morphologically and taxonomically different from Caeoma or Aecidium, causes great confusion in the taxonomy of rust fungi because these anamorphic genera are connected with many teleomorphic genera (Ji et al., 2017, 2019; Kakishima et al., 2018; Kasuya et al., 2020; Ono, 2016). Therefore, we propose a new combination in Gymnosporangium for C. mori (≡ A. mori). Uredinial anamorphic name, P. mori is also treated as its obligate synonym. In addition, the present phylogenetic analyses strongly suggest that Roestelia brucensis Parmelee as a member of the genus Gymnosporangium (Fig. 2). Two sequences of R. brucensis (KJ720189 is deposited as Uredo apacheca R.S. Peterson in the NCBI GenBank databases but it was reassessed as R. brucensis by Zhao et al., 2020) were placed within a strongly supported clade [SH-aLRT(%)/UFBoot (%)/BPP = 98/100/1.00] in the major clade comprising Gymnosporangium species. Although Gymnosporangium has been conserved against the older name Roestelia Rebent. (Aime & McTaggart, 2021), R. brucensis has not been transferred to Gymnosporangium. Therefore, we here propose a new combination of R. brucensis in the genus Gymnosporangium.
Gymnosporangium mori (Barclay) T. Kasuya, K. Hosaka, Jing X. Ji & Kakish., comb. nov.
MycoBank no.: MB 849771.
Basionym: Caeoma mori Barclay, J. Asiat. Soc. Bengal, Pt. 2, Nat. Sci. 59: 97, 1890.
Obligate synonyms: Aecidium mori (Barclay) Barclay, J. Asiat. Soc. Bengal, Pt. 2, Nat. Sci. 60: 225, 1891; Uredo mori (Barclay) Sacc., Syll. Fung. (Abellini) 9: 334, 1891; Peridiopsora mori (Barclay) K.V. Prasad, B.R.D. Yadav & Sullia, Curr. Sci. 65: 426, 1993.
Typus: Pl. IV, Fig. 6 in Barclay (1890) (Holotype, cited from Index Fungorum); JAPAN, Ibaraki Prefecture, Joso, Tategata (approx. 36º7’56.17 N, 139º59’51.59 E, alt. 15.8 m), on Morus alba L., 16 Jun 2021, T. Kasuya, TNS-F-99251 (Epitype, designated here). Because a figure by Barclay (1890) is designated as the type of this species (Index Fungorum) we have selected an epitype specimen to specify the morphological characteristics and phylogenetic position of this species.
DNA sequence ex-Epitype: INSD accession no. OR415605 for 28S, OR415613 for 18S and OR423360 for CO3.
Additional specimens examined: JAPAN, Ibaraki Prefecture: Joso, Tategata, on Morus alba, 30 May 2023, M. Kakishima, TNS-F-99265; Joso, Moto-toyoda, on M. alba, 16 Jun 2021, T. Kasuya, TNS-F-99252; Tsukuba, Amakubo, Tsukuba Botanical Garden, on M. alba, 24 May 2023, M. Kakishima, TNS-F-108304; Shimotsuma, Shimoda, on M. alba, 19 Jun 2023, T. Kasuya, TNS-F-99266. JAPAN, Saitama Prefecture: Kitamoto, Ishitoshuku, on M. alba, 1 Jun 2023, T. Kasuya, TNS-F-99267; Kawajima, Demaru-nakago, on M. alba, 1 Jun 2023, T. Kasuya, TNS-F-99268; Kawajima, Demaru-shimogo, on M. alba, 1 Jun 2023, TNS-F-99269.
Distribution and host plants hitherto recorded: Asia (Afghanistan, Burma, China, India, Indonesia, Japan, Korea, Pakistan, Philippines, Taiwan and Thailand). On Moraceae: Broussonetia kazinoki Sieb., B. papyrifera (L.) L’Hér. ex Vent., Morus acidosa Griff., M. alba L. [= M. atropurpurea Roxb., M. chinensis Lodd. ex Loudon, M. intermedia Perr., M. latifolia Poir., M. multicaulis (Perr.) Perr., M. tatarica L.], M. australis Poir. (= M. bombycis Koidz.), M. cathayana Hemsl., M. indica L., M. kagayamae Koidz., M. mongolica (Bureau) C.K. Schneid., M. serrata Roxb. (Ahmad et al., 1997; Boedijn, 1959; Cho & Shin, 2004; Dizon & Kakishima, 1995; Giatgong, 1980; Hiratsuka & Chen, 1991; Hiratsuka et al., 1992; Iqbal & Khalid, 1996; Ito, 1950; Kobayashi, 2007; Mordue, 1991; Prasad et al., 1993; Spaulding, 1961; Tai, 1979; Teng, 1996).
Gymnosporangium brucense (Parmelee) T. Kasuya, K. Hosaka, Jing X. Ji & Kakish., comb. nov.
MycoBank no.: MB 849772.
Basionym: Roestelia brucensis Parmelee, Can. J. Bot. 43: 259, 1965.
Distribution and host plants hitherto recorded: North America (Canada, Mexico and USA). On Juniperaceae: Juniperus horizontalis Moench. (Parmelee, 1965; Parmelee & Corlett, 1973).
The authors declare no conflict of interest. All the experiments undertaken in this study comply with the current laws of Japan.
We are very much obliged to Dr. Kohei Yamamoto, Mr. Ikuo Asai and Ms. Kayoko Kasuya for their helps to facilitate the fieldwork. Special thanks also go to Dr. Emi Miwa, TechnoSuruga Laboratory Co. Ltd., Japan, for her technical support to molecular experiments. We are grateful to Dr. Konstanze Bensch, Mycobank Curator at Botanische Staatsammlung München, Germany, for her valuable suggestions to the nomenclature of the rust fungus. This work was supported in part by JSPS KAKENHI Grant Numbers JP20H03006, JP20K06805 and JP23K05895.