SCIS & ISIS
SCIS & ISIS 2008
セッションID: TH-F2-1
会議情報

Classification of gliomas by applications of ICA, probit model and MCMC method to gene expression profiles
*Yu OhtoriiToshimasa YamazakiSei-ichiro KamataHiroki Sasaki
著者情報
キーワード: gene expression profiles, ICA, MCMC
会議録・要旨集 フリー

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抄録
Gene expression profiles could be a powerful tool for therapeutic decisions and prognostic estimation of disease. It is useful but transforming such huge data into a mechanistic understanding of disease is very difficult. Recently, researches aimed at uncorvering the modular organization and function of transcriptional networks and responses in disease. In this study, such modules[1] are extracted from the gene expression profiles as statistically independent components(ICs) obtained by independent component analysis(ICA). Therefore, a probit model for classificaion of disease is constructed by the ICs, and the model parameters are estimated by Markov Chain Monte Carlo(MCMC) method. The present method is applied to gene expression profiles of glioblastoma and anaplastic oligodendroglioma. As a result, we obtain a probit model which can classify the two kinds of gliomas. In addition, biological functions are extracted as the ICs.
著者関連情報
© 2008 Japan Society for Fuzzy Theory and Intelligent Informatics
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