Potamogeton ×
apertus Miki is a putative natural hybrid between
P. pusillus L. and
P. oxyphyllus Miq., recognized in 1935. However, after being recognized, information on the hybrid was scarce, and it was thought to be close to extinction. Moreover, the identification of
Potamogeton taxa with narrow leaves is difficult because of the fewer diagnostic characteristics available for distinction. Thus, in the present study, we conducted morphological and genetic analyses using
P. ×
apertus, collected from Ehime Prefecture, rediscovered after approximately 80 years. The results of genetic analysis indicated that all individuals of the putative hybrid collected from four sites were a unidirectional hybrid between
P. oxyphyllus and
P. pusillus as maternal and paternal parents, respectively. Morphological analysis demonstrated that
P. pusillus,
P. ×
apertus, and
P. oxyphyllus had shallow fissure, deep fissure, and non-connate stipules, respectively. Flowers of the hybrid were smaller than those of
P. oxyphyllus. In the hybrid, pistils and deformed stigmas were covered by perianths. Leaf and inflorescence morphologies of the hybrid were similar to those of
P. pusillus, but the hybrid also had non-elongated inflorescence axes between the upper and lower parts, similar to
P. oxyphyllus.
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