For the synthesis of difficult sequence-containing peptides, we have disclosed an
O-acyl isopeptide method, in which a native amide bond at a hydroxyamino acid residue, e.g., Ser was isomerized to the ester bond, followed by an
O-N intramolecular acyl migration. However, in some of the peptides synthesized in the method, a large amount of racemization occurred during esterification on the resin.
To avoid this problem, we have developed a novel
O-acyl isodipeptide unit, Boc-Ser/Thr(Fmoc-Xaa)-OH. In the method using this unit, racemization-inducible esterification on the resin could be omitted. Crude isopeptide synthesized using the unit was of high purity with no byproduct derived from the difficult sequence or racemization. This suggests that the use of
O-acyl isodipeptide units allow the application of the
O-acyl isopeptide method to fully automated protocols for the synthesis of long peptides and proteins.
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