Sanshi-Konchu Biotec
Online ISSN : 1884-7943
Print ISSN : 1881-0551
ISSN-L : 1881-0551
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  • SilkBase Update: Addition of Information on Predicted Protein 3D Structures
    Munetaka KAWAMOTO, Susumu KATSUMA
    2022 Volume 91 Issue 3 Pages 3_217-3_220
    Published: 2022
    Released on J-STAGE: January 20, 2023
    DOIhttps://doi.org/10.11416/konchubiotec.91.3_217
    JOURNAL FREE ACCESS
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     SilkBase (https://silkbase.ab.a.u-tokyo.ac.jp) is an integrated transcriptomic and genomic database for Bombyx mori and related species. This database not only provides the latest versions of genome sequences and gene models, but is also a genome browser and analysis tool that allows users to understand the landscapes of gene expression, PIWI-interacting RNA production, and histone modifications. Here we have updated SilkBase with protein structure predictions from a silkworm gene model using AlphaFold2, including other information such as the expression levels of each tissue and linkage in the genome browser.

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