2023 Volume 46 Issue 9 Pages 1316-1323
The hepatic elimination of chemical substances in pharmacokinetic models requires hepatic intrinsic clearance (CLh,int) parameters for unbound drug in the liver, and these are regulated by the liver-to-plasma partition coefficients (Kp,h). Both Poulin and Theil and Rodgers and Rowland have proposed in silico expressions for Kp,h for a variety of chemicals. In this study, two sets of in silico Kp,h values for 14 model substances were assessed using experimentally reported in vivo steady-state Kp,h data and time-dependent virtual internal exposures in the liver and plasma modeled by forward dosimetry in rats. The Kp,h values for 14 chemicals independently calculated using the primary Poulin and Theil method in this study were significantly correlated with those obtained using the updated Rodgers and Rowland method and with reported in vivo steady-state Kp,h data in rats. When pharmacokinetic parameters were derived based on individual in vivo time-dependent data for diazepam, phenytoin, and nicotine in rats, the modeled liver and plasma concentrations after intravenous administration of the selected substrates in rats using two sets of in silico Kp,h values were mostly similar to the reported time-dependent in vivo internal exposures. Similar results for modeled liver and plasma concentrations were observed with input parameters estimated by machine-learning systems for hexobarbital, fingolimod, and pentazocine, with no reference to experimental pharmacokinetic data. These results suggest that the output values from rat pharmacokinetic models based on in silico Kp,h values derived from the primary Poulin and Theil model would be applicable for estimating toxicokinetics or internal exposure to substances.
Physiologically based pharmacokinetic (PBPK) models are widely used to predict pharmacokinetics and toxicokinetics in humans and animals.1–4) The hepatic elimination of chemicals in these PBPK models requires important parameters such as the hepatic intrinsic clearance (CLh,int) of the unbound fraction (fu,p) of the substance; CLh,int values are dependent on liver-to-plasma partition coefficients (Kp,h). Poulin and Theil proposed a mathematical formula for calculating in silico Kp,h values.5–7) Rodgers and Rowland8–10) also modified in silico models using more complex equations to account for the ionization states of substances. There have been limited reports11,12) comparing the applications of Kp,h values derived using these two different methods in PBPK models when assessing in vivo time-course data. The views on the relative accuracies of these two in silico Kp,h models are not consistent.11–14)
Interactions between human cytochrome P450 (P450) 2C and 3A substrates lead to increased incidences of hepatic toxicity. Among the many relevant factors, polymorphic impaired P450 2C9 or 3A4 variants may underlie these probe drug toxicities. In the course of virtual estimations of plasma and hepatic concentrations of celecoxib15) and atorvastatin16) in Asian subjects harboring P450 2C9 or 3A4 variants, we recently used in silico Kp,h values from Poulin and Theil5,6) to estimate high internal exposure to these medicines. To assess these modeled high virtual plasma or hepatic exposures in special subjects harboring impaired P450 variants by pharmacokinetic modeling, selection of the in silico Kp,h model may be a critical factor.
The aim of this study was to compare the in silico Kp,h values derived using the Poulin and Theil method and those of the Rodgers and Rowland method with in vivo steady-state Kp,h values experimentally determined in recent surveys of 14 substances in rats.16) The reported values were somewhat different from those obtained in our preliminary calculation using their own in silico physicochemical properties. Furthermore, we compared the reported and predicted hepatic and plasma concentrations after intravenous administration of six selected substrates in rats available in the literature using two sets of in silico Kp,h values as input parameters for simplified rat PBPK models. Herein, we report mostly similar results for the output values from rat pharmacokinetic models based on in silico Kp,h values derived from the simply applicable Poulin and Theil model and the highly selective Rodgers and Rowland models for estimating toxicokinetics or internal exposure to substances with unknown parameter values.
In the current study, reported values for octanol–water partition coefficient (log P), plasma unbound fraction (fu,p), acid dissociation constant (pKa) and Kp,h derived from Poulin and Theil and Rodgers and Rowland models of 14 substances (previously obtained using Gastro Plus software) were taken from the literature.12) These literature-derived in silico physicochemical property values were also calculated using different software packages in this study. In silico physicochemical properties, namely, pKa, fu,p, and log P, of the test chemicals were obtained by in silico estimation using ACD/Percepta (Advanced Chemistry Development, Toronto, ON, Canada), Simcyp (Certara UK, Sheffield, U.K.), and ChemDraw (PerkinElmer, Inc., Waltham, PA, U.S.A.) software, respectively.17–19) The hepatic and plasma concentrations over time and the area under the curve (AUC) of the chemical substances were estimated using simplified PBPK models consisting of metabolizing (liver), excreting (kidney), central (main), and distributing (sub) compartments. The details of establishing a simplified PBPK model have been recently reported.18) The input parameters for the simplified PBPK model of the six substances are listed in Tables 1 and 2. The pharmacokinetic parameters of orally administered diazepam, phenytoin, and nicotine in rats were previously established based on individual in vivo time-dependent concentration data.20,21) Input parameters for hexobarbital, fingolimod, and pentazocine were estimated using machine learning systems under considerations of a wide variety of chemical space22–24) without any reference to experimental pharmacokinetic data.
Chemical | Substance type | Octanol–water partition coefficient, log P | Plasma unbound fraction, fu,p | Acid dissociation constant, pKa | Liver-to-plasma partition coefficients, Kp,h | ||||||||
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Reported12) | Calculated | Reported12) | Calculated | Reported12) | Calculated | Reported12) | Calculated | In silico Poulin and Theil | In silico Rodgers and Rowland | In vivo stead-state Kp,h from literature | |||
Reported12) | Calculated | Reported12) | Calculated | Reported12) | |||||||||
Verapamil | Base | Strong base | 4.45 | 4.47 | 0.172 | 0.0950 | 8.46 | 9.60 | 7.12 | 7.16 | 7.49 | 82.7 | 10.1 |
Nicotine | Base | Strong base | 0.72 | 0.93 | 0.824 | 0.721 | 3.05, 8.56 | 7.85 | 0.80 | 0.81 | 26.8 | 2.11 | 7.00 |
Tolbutamide | Acid | Acid | 2.27 | 0.52 | 0.0688 | 0.201 | 5.37, 10.9 | 5.64 | 2.08 | 0.50 | 0.11 | 1.55 | 0.30 |
Diltiazem | Base | Strong base | 3.65 | 3.65 | 0.270 | 0.169 | 8.33 | 8.37 | 7.19 | 6.97 | 14.8 | 45.8 | 3.97 |
Phenytoin | Acid | Acid | 1.71 | 2.09 | 0.0944 | 0.189 | −2.83, 1.1 (base) 6.76, 11.4 (acid) | 8.28 | 0.99 | 1.80 | 0.14 | 4.14 | 0.88 |
Propranolol | Base | Strong base | 2.89 | 2.75 | 0.354 | 0.384 | 9.48 | 8.99 | 5.44 | 4.88 | 21.9 | 20.3 | 1.24 |
Diazepam | Base | Ampholyte | 2.80 | 2.96 | 0.0982 | 0.124 | 2.96 | 13.9, 3.52 | 4.03 | 4.80 | 1.37 | 20.9 | 2.03 |
Fingolimod | Base | Strong base | 3.72 | 5.06 | 0.207 | 0.0480 | 9.21 | 8.63 | 7.25 | 6.95 | 13.1 | 29.3 | 31.4 |
Chloroquine | Base | Strong base | 5.11 | 5.06 | 0.0819 | 0.0540 | 1.02, 7.25, 9.86 | 10.7 | 7.15 | 6.99 | 28.5 | 130 | 420 |
Cyclosporine A | Neutral | Acid | 3.18 | 2.90a) | 0.241 | 0.130 | – | 10.3 | 5.60 | 4.59 | 4.64 | 18.4 | 16.6 |
Ethoxybenzamide | Neutral | Weak base | 1.32 | 1.37 | 0.362 | 0.422 | 11.8 | 0.09 | 0.82 | 0.89 | 0.48 | 1.99 | 1.40 |
Pentazocine | Base | Weak baseb) | 4.20 | 4.67 | 0.235 | 0.550 | 8.16 (base) 10.3 (acid) | 8.04 | 7.10 | 10.2 | 20.2 | 178 | 0.47 |
Hexobarbital | Acid | Acid | 1.81 | 1.63 | 0.282 | 0.238 | 8.17 | 8.10 | 1.31 | 1.02 | 0.59 | 2.47 | 1.30 |
Quinidine | Base | Strong base | 2.65 | 3.44 | 0.432 | 0.325 | 3.87, 7.95 | 8.56 | 4.41 | 7.42 | 16.1 | 23.2 | 5.50 |
a) Because ChemDraw software gave 14.4 for log P resulting in a 10−6 value for fu,p of cyclosporine A, this property was taken from another report.9) b) The pKa base for pentazocine (8.16) yielded a negative value for Kp,h_Rodgers and Rowland using Eq. (4), and a positive in silico Kp,h value was obtained using Eq. (3) for a weak base.
Chemical | Blood-to-plasma concentration ratio, Rb | Volume of systemic circulation, V1 (L) | Hepatic intrinsic clearance, CLh,int (L/h) | Hepatic clearance, CLh (L/h) | Renal clearance, CLr (L/h) | Reference for time-dependent pharmacokinetics or input parameters by machine-learning systems |
---|---|---|---|---|---|---|
Group 1 (Fig. 3) | ||||||
Diazepam | 0.851 | 0.264 | 7.21 | 0.436 | 0.0465 | 20) |
Phenytoin | 0.887 | 0.365 | 0.0760 | 0.0141 | 0.00145 | 20) |
Nicotine | 0.842 | 1.08 | 3.98 | 0.657 | 0.0994 | 21) |
Group 2 (Fig. 4) | ||||||
Hexobarbital | 0.904 | 0.840 | 3.61 | 0.428 | 0.0428 | 22–24) |
Fingolimod | 0.770 | 0.595 | 4.45 | 0.171 | 0.0171 | 22–24) |
Pentazocine | 0.903 | 1.56 | 6.99 | 0.698 | 0.0698 | 22–24) |
A set of differential equations was solved for the amounts and concentrations:
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where V1, Vh, Vr, Ch, Cr, Cb, Xp, k12, k21, and Ri.v are the volumes of systemic circulation, liver and kidney; hepatic, renal, and blood substrate concentrations; a peripheral-compartment substrate amount; the rate constants for transfer of the drug from/to the central (first) compartment and to/from the peripheral (second) compartment; and the rate of administration, respectively.23) Vh, Vr, and Qh/Qr are the liver (8.5 mL) and kidney (3.7 mL) volumes and the blood flow rates of the systemic circulation to the hepatic/renal compartments (0.853 L/h) in rats (0.25 kg body weight).25,26) The blood-to-plasma concentration ratio (Rb) was calculated from the fu,p, and log P values as follows:
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where
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The Poulin and Theil model and the Rodgers and Rowland model for Kp,h are shown in Eqs. (1), (3), (4), (7) and (8) below.
Poulin and Theil ModelKp,h (hereafter Kp,h_Poulin and Theil) values can be expressed using Eqs. (1) and (2):
![]() | (1) |
![]() | (2) |
where P is the octanol–water partition coefficient, Vnlt is the fractional tissue volume of neutral lipids (0.0138), Vnlp is the fractional plasma volume of neutral lipids (0.00147), Vpht is the fractional tissue volume of phospholipids (0.0303), Vphp is the fractional plasma volume of phospholipids (0.00083), Vwt is the fractional tissue volume of water (0.705), Vwp is the fractional plasma volume of water (0.96), and fu,t and fu,p are the plasma and tissue unbound fractions, respectively.5,6)
Rodgers and Rowland ModelKp,h (hereafter Kp,h_Rodgers and Rowland) values for (1) acid to very weak bases, zwitterionic compounds, and moderate to strong bases; (2) moderate to strong bases; (3) zwitterionic compounds with one pKa (base) ≥7, and (4) di-basic and di-acidic zwitterionic compounds can be expressed using different equations:
Acid to Very Weak Bases and Zwitterionic Compounds![]() | (3) |
where X and Y can be expressed as follows:
for very weak monoprotic bases:
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for monoprotic acids:
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for neutral substances:
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for zwitterions:
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where [PR]T and [PR]P are the concentrations of albumin or lipoprotein in tissue and plasma, respectively, and [PR]T/[PR]P is obtained from the literature9); pHp is the plasmatic pH (7.4)27); pHIW is the intracellular water pH (7.0)28); fNL is the fractional tissue volume of neutral lipid (0.0135)9); fNP is the fractional tissue volume of neutral phospholipid (0.0238)9); fEW is the tissue fraction of extracellular water (0.642)9); fIW is the tissue fraction of intracellular water in liver (0.642)9); fNL,P is the fractional tissue volume of neutral lipid in plasma (0.0023)5,9,29); and fNP,P is the fractional tissue volume of neutral phospholipid in plasma (0.0013).5,9,29)
Moderate to Strong Bases with One pKa (Base) ≥8![]() | (4) |
![]() | (5) |
![]() | (6) |
where KaBC is the ionization constant in blood cells, KpuBC is the blood cell to plasma water concentration ratio with Rb instead of B:P,30) [AP−]T is the tissue concentration of acidic phospholipids in the liver (4.56),10)pHBC is the blood cell pH (7.2),31) and Ht is the rat hematocrit (0.45).19)
Zwitterionic Compounds with One pKa (Base) ≥7![]() | (7) |
X and Y can be expressed as follows:
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![]() | (8) |
![]() | (9) |
X, Y, and Z are defined as follows:
For di-basic group zwitterions:
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For di-acidic group:
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The necessary input parameters V1 and CLh,int for PBPK models for nicotine, phenytoin, and diazepam were conventionally computed to achieve the best fit to reported rat plasma concentrations.20,21) The in silico derived input parameters for rat PBPK models of hexobarbital, fingolimod, and pentazocine were generated using a previously reported machine learning system.22–24)
The relationships between the in silico Kp,h values derived from the Poulin and Theil model and the Rodgers and Rowland model based on reported and calculated in silico physicochemical property values were compared for 14 chemicals, as validated in the previous study12) (Fig. 1). A significant correlation of Kp,h values by the Poulin and Theil model reported12) using ADMET Predictor software and calculated independently in the current study was confirmed (r = 0.93, p < 0.01; Fig. 1A); there were no significant effects when the input physicochemical properties calculated using different software packages were used for the Poulin and Theil model. Despite there being only an apparent relationship (r = 0.51, p = 0.06) between reported and calculated Kp,h values by the Rodgers and Rowland model (Fig. 1B), a significant positive correlation between Kp,h_Poulin and Theil and Kp,h_Rodgers and Rowland values for the 14 chemicals independently calculated in this study was confirmed (r = 0.80, p < 0.01; Fig. 1C); there were some differences in the output Kp,h_Rodgers and Rowland values depending on the input physicochemical property values used for the Rodgers and Rowland models (Table 1). When comparing the in silico Kp,h values calculated based on the in silico physicochemical properties derived using our methods, the Rodgers and Rowland models tended to produce larger Kp,h values than those of the Poulin and Theil model (Fig. 1C, Table 1).
(A) A significant positive correlation is shown of Kp,h values obtained using the Poulin and Theil model (Kp,h_Poulin and Theil) calculated in the current study and those reported using Gastro Plus software.12) Solid and dotted lines, respectively, show the linear regression line and 95% confidence intervals. (B) An apparent relationship of reported Kp,h values calculated using the Rodgers and Rowland model (Kp,h_ Rodgers and Rowland) and those calculated in the current study is shown with the linear regression line and 95% confidence intervals. (C) A significant positive correlation between Kp,h_Poulin and Theil and Kp,h_Rodgers and Rowland values for 14 chemicals calculated independently in this study are shown with the linear regression line and 95% confidence intervals (solid and dotted lines, respectively).
Figure 2 shows comparisons between the in vivo experimentally reported Kp,h values and in silico derived Kp,h values. A significant correlation was observed between the experimentally determined Kp,h and in silico Kp,h_Poulin and Theil values for 14 chemicals (r = 0.53, p = 0.050), but not between the experimentally determined Kp,h and in silico Kp,h_Rodgers and Rowland values (r = 0.46, p = 0.096). The average absolute fold errors of Kp,h_Poulin and Theil and Kp,h_Rodgers and Rowland values for the 14 chemicals were 3.28 and 5.48, respectively. This finding suggested that the Rodgers and Rowland model exhibits larger errors than the Poulin and Theil model under the present conditions. These results indicate that the Rodgers and Rowland model tended to overestimate Kp,h, whereas the Poulin and Theil model tended to underestimate Kp,h (Figs. 1, 2) for the 14 selected substances under present conditions.
A significant linear regression line and 95% confidence intervals are shown for in silico Kp,h_Poulin and Theil values (solid and dotted lines).
After pharmacokinetic parameters were established based on individual in vivo time-dependent concentration data for diazepam, phenytoin, and nicotine in rats, the modeled liver and plasma concentrations after intravenous administration in rats were determined using two sets of in silico derived Kp,h values. Figure 3 shows the reported measured plasma and liver concentrations for substances and the predicted plasma and liver concentrations over time generated using the above-described PBPK models based on two sets of calculated Kp,h values, i.e., those derived using the Poulin and Theil model and the Rodgers and Rowland model.
The input pharmacokinetic parameters for the PBPK model were derived based on in vivo time-dependent data for diazepam, phenytoin, and nicotine in rats. Liver (solid lines) and plasma (dashed lines) concentrations of diazepam (A), phenytoin (B), and nicotine (C) in rats after virtual intravenous administrations were modeled using in silico Kp,h_Poulin and Theil (in black) or Kp,h_Rodgers and Rowland (in gray) values calculated in this study. The reported in vivo plasma (open circles) and liver (gray circles) concentrations for diazepam,20) phenytoin,20) and nicotine21) are also shown.
The measured and predicted AUC values in plasma and liver were calculated and are presented in Table 3 for the selected substances. Ratios of measured to predicted AUC in plasma were confirmed to be within a 2- or 3-fold range, providing evidence for valid PBPK model predictions. The ratios of the measured to predicted hepatic AUCs for diazepam (Fig. 3A) and phenytoin (Fig. 3B) were 1.9-fold and 2.1-fold, respectively, for the Poulin and Theil model, and 8.5-fold and 4.6-fold, respectively, for the Rodgers and Rowland models (Table 3). The Poulin and Theil model performed better than the Rodgers and Rowland models for the measured hepatic concentrations of diazepam and phenytoin (Figs. 3A, B). In contrast, the predicted liver concentrations of nicotine using the two sets of Kp,h values were not consistent with the reported measured liver concentrations (Fig. 3C).
AUC, ng h/mL | ||||
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In vivo reported, Reference | In silico Poulin and Theil | In silico Rodgers and Rowland | ||
Plasma | ||||
Diazepam | AUC0–8 h | 222 (1.0)6) | 683 (3.1) | 684 (3.1) |
Phenytoin | AUC0–3 h | 11700 (1.0)32) | 6080 (0.52) | 5970 (0.51) |
Nicotine | AUC0–5 h | 38.4 (1.0)33) | 36.6 (0.95) | 36.6 (0.95) |
Hexobarbital | AUC0–1.5 h | 28100 (1.0)34) | 18300 (0.65) | 18200 (0.65) |
Fingolimod | AUC0–12 h | 2090 (1.0)35) | 2960 (1.4) | 2830 (1.4) |
Pentazocine | AUC0–1.5 h | 462 (1.0)36) | 338 (0.73) | 283 (0.61) |
Liver | ||||
Diazepam | AUC0–8 h | 806 (1.0)6) | 1530 (1.9) | 6840 (8.5) |
Phenytoin | AUC0–3 h | 5210 (1.0)32) | 10700 (2.1) | 24100 (4.6) |
Nicotine | AUC0–5 h | 200 (1.0)33) | 5.97 (0.030) | 15.5 (0.078) |
Hexobarbital | AUC0–1.5 h | 29500 (1.0)34) | 8840 (0.30) | 21300 (0.72) |
Fingolimod | AUC0–24 h | 63200 (1.0)35) | 16100 (0.25) | 68300 (1.1) |
Pentazocine | AUC0–5 h | 543 (1.0)36) | 1110 (2.0) | 16900 (31) |
The numbers in parentheses indicate fold changes relative to the reported in vivo values.
The ratios of the predicted to reported hepatic AUC values for hexobarbital, fingolimod, and pentazocine were 0.30-, 0.25-, and 2.0-fold, respectively, using the Poulin and Theil model, and 0.72-, 1.1-, and 31-fold, respectively, using the Rodgers and Rowland models (Table 3, Fig. 4). For hexobarbital (Fig. 4A) and fingolimod (Fig. 4B), the predicted liver concentrations derived from the Rodgers and Rowland model were more accurate than those derived from the Poulin and Theil model. However, for pentazocine, the opposite result was observed: the predicted liver concentrations derived using the Rodgers and Rowland model were overestimated (Fig. 4C). The actual reasons for some discrepancies between the modeled and reported time profiles of the liver and plasma concentrations are not clear. It should be noted that most reported experimental values have been obtained in intravenous administration experiments, whereas our input parameters for the simulations were originally derived from oral administrations based on the actual reported pharmacokinetics or their machine-learning systems.
The input parameters for the PBPK models were estimated by machine-learning systems with no reference to experimental pharmacokinetic data. Liver (solid lines) and plasma (dotted lines) concentrations of hexobarbital (A), fingolimod (B), and pentazocine (C) were modeled in rats after virtual intravenous administrations using in silico Kp,h_Poulin and Theil (in black) or Kp,h_Rodgers and Rowland (in gray) values calculated in this study. The reported in vivo plasma (open circles) and liver (gray circles) concentrations for hexobarbital,34) fingolimod,35) and pentazocine36) are also shown.
Previously, it was reported that the Rodgers and Rowland model outperformed the Poulin and Theil model in reproducing measured liver concentrations.12) However, when using our in silico physicochemical property prediction methods, the results showed approx. 50% accuracy and no clear superiority or inferiority could be determined. In contrast, in silico Kp,h values obtained using the Poulin and Theil model were closer to the experimentally determined Kp,h values (slope coefficient of 1.0, Fig. 2) than those obtained using the Rodgers and Rowland models (slope coefficient of 0.54, Fig. 2). Unlike the Poulin and Theil model, the Rodgers and Rowland models, including Eqs. (3), (4), (7), and (8), exhibit a significant dependence on the input physicochemical properties, resulting in substantial variations in the calculated outcomes. In the case of basic substances categorized near the boundary between weak bases and strong bases, different outputs can be generated depending on the selection of Eqs. (3) and (4) for weak bases or strong bases, particularly when different prediction software automatically provide different pKa values.
The choice between these two in silico Kp,h model equations depends on the availability of accurate physicochemical data for the test substances. If test substances such as medicines can be investigated in detail to obtain reliable physicochemical properties, these chemical descriptors could work well to obtain accurate in silico Kp,h values using the Rodgers and Rowland model. This study focused on the in silico Kp,h values derived using the Poulin and Theil method and those of the Rodgers and Rowland method with in vivo steady-state Kp,h values experimentally determined in recent limited surveys of 14 medicinal substances in rats16) It should be expected to accumulate cases of liver concentrations measured in in vivo experiments for various chemical substances to generalize the current findings. In conclusion, these results suggest that the output values from rat pharmacokinetic models based on in silico Kp,h values derived from the primary Poulin and Theil model are applicable for estimating toxicokinetics or internal exposure to medicines, and are possibly expandable in the future to industry or food substances consisting of a wide variety of chemical spaces for which physicochemical values are unknown.
This study was supported in part by the Japan Chemical Industry Association Long-Range Research Initiative Program. The authors thank Norie Murayama, Haruka Nishimura, Fumiaki Shono, and Kimito Funatsu for their assistance. We are also grateful to David Smallbones for copyediting a draft of this article.
The authors declare no conflict of interest.