2014 Volume 62 Issue 2 Pages 168-175
A series of new hydroxamic acid derivatives (6a–f) at C-3 position of fluoroquinolones were designed and synthesized through multistep synthesis. The design concept involved replacement of the 3-carboxylic acid in fluoquinolones with hydroxamic acid as an acid mimicking group. The synthetic work employed in this work provides a good example for the synthesis of pure hydroxamic acid based fluoroquinolones. The synthesized compounds were characterized by 1H-NMR, electrospray ionization (ESI)-MS and IR. The new compounds were tested for their in vitro antimicrobial and anti-proliferative activity. Out of the six derivatives, compound 6e exhibited moderate antibacterial activity by inhibiting the growth of Escherichia coli and Klebsiella pneumoniae (MIC: 4.00–8.00 µg/mL). Compounds 6b and 6f displayed good growth inhibition against A549 Lung adenocarcinoma and HCT-116 Colon carcinoma cell lines.
Fluoroquinolones are a class of quinolone compounds and known as first made broad spectrum antibiotics. The fluoroquinoles such as Ciprofloxacin and Norfloxacin are extremely successful antibiotics that have potent, broad spectrum antibacterial activity, and relatively few side effects.1) These antibiotics exert their antimicrobial activity by binding to 2 type II bacterial topoisomerase enzymes, DNA gyrase (subunits encoded by gyrA and gyrB) and topoisomerase IV (subunits encoded by grlA and grlB for Staphylococcus aureus). This binding induces permanent double-stranded DNA breaks, which results in cell death.2,3)
Structure–activity relationship (SAR) studies of quinolone antibacterial agents showed that the basic group at the C-7 position is the most adaptable site for chemical change and an area that greatly influences their potency, spectrum and safety.4,5) In general, 5- and 6-membered nitrogen heterocycles have been proven to be the optimal substituents.6)
However, the development of resistance to this class of drugs, and the resulting loss of their effectiveness as antimicrobial therapies, poses a serious global health threat. Particularly, most clinical isolates of methicillin-resistant Staphylococcus aureus (MRSA) have become resistant to fluoroquinolone antibiotics within five years of their introduction.7) Also, the proportion of clinical isolates of Pseudomonas aeruginosa that are resistant to fluoroquinolone antibiotics has increased by 30% over the past 20 years.8) Furthermore, similar increases in resistance are now being observed with Escherichia coli on global fluoroquinolone resistance,9) which is a concern as E. coli causes more nosocomial blood stream infections than S. aureus.10) Therefore, there is a need to identify new fluoroquinolone derivatives with alternate structural features. To date all of the marketed fluoroquinolone antibiotics contain the C-3 carboxylic acid group.
In our continuous efforts to identify new antibacterial and anticancer agents,11–14) we have introduced hydroxamic acid at C-3 position of fluoroquinolones and hydroxamic acids are known to be bioisosteres of carboxylic acids.15) Also the hydroxamic acid derivatives are known to be good building blocks in anticancer and anti bacterial drug discovery.16,17) The design strategy of hydroxamic acid derivatives with a representative example (compound 6b) is shown in Fig. 1.
In the present work, the target hydroxamic acid based fuloroquinolones were synthesized in continuation to recently published14) carboxylic acid based fluoroquinolone derivatives. The present work also provides large scale synthesis of O-(tetrahydro-pyran-2-yl)hydroxylamine 3 in Chart 1 and its application in synthesis of chemically pure hydroxamic acid derivatives as shown in Chart 2.
The quinolone ester 1 was synthesized from the commercially available 2,4,5-trifluoro-benzoic acid in seven steps as per our previously published procedure.14) After having synthesized known compound 1, base hydrolysis of compound 1 with lithium hydroxide at 60°C yielded carboxylic acid derivate 2 in good yield. Then compound 3 was conveniently synthesized from commercially available N-hydroxy phthalimide 1′ in two steps as per the literature procedure18) in excellent yields.
Then, our attention was turned towards synthesis of key intermediate compound 4. Our initial efforts to convert compound 2 to compound 4 by reacting the compound 2 with compound 3 in the presence of various coupling conditions such as 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC)·HCl/N-hydroxybenzotriazole (HOBt)/N,N-dimethylformamide (DMF), EDC·HCl/HOBt/dimethyl sulfoxide (DMSO), EDC/HOBt/4-dimethylaminopyridine (DMAP)/DMF, EDC/HOBt/DMAP/DMSO did not result the desired compound 3. We believe that this could be because of very low solubility of compound 2 in DMF and DMSO. Even attempts prepare acid chloride of compound 2 with thionyl chloride and oxalyl chloride were not successful. Fortunately, when we attempted classical mixed anhydride reaction by reacting the compound 2 with ethyl chloroformate in the presence of triethyl amine and compound 3 conveniently resulted desired compound 4 in good yield. The alkyl amino derivatives 5a–f were smoothly obtained by reacting compound 4 with corresponding alkyl amines in the presence of triethyl amine and potassium iodide at room temperature.
After having synthesized pre-final compounds 5a–f, our initial attempts to de-protect tetrahydropyranyl group of compound 5a with pyridinium p-toluenesulfonate (PPTS) or p-toluenesulfonic acid (PTSA) in the presence of methanol yielded compound 6a along with 5–10% of corresponding methoxy hydroxamic acid as an impurity. Similar results were observed when we attempted same reaction with ethanol. Attempts to remove the impurity were not successful by normal phase silica gel column chromatography as the product was highly polar in nature.
At this juncture, we have opted water as protic solvent to avoid the formation of methoxy hydroxamic acid and hydrochloric acid as an acid for the de-protection of tetrahydropyranyl group. Then reaction of the compound 5a with 2M hydrochloric acid in water at room temperature smoothly resulted desired product 6a with >98% HPLC purity. Similar experimental conditions were applied for the synthesis of remaining compounds 6b–f in good yields.
The structures of most of the synthesized compounds were confirmed by IR, 1H- and 13C-NMR and LC mass spectral studies except final compounds (6a–f). We could not characterize the final compounds by 13C-NMR as the solubility of these compounds are very low in DMSO, CD3OD and D2O. The structure of compound 2 was confirmed by their 1H-NMR analyses. The 1H-NMR spectrum of compound 2 confirms hydrolysis of ester group due to broad singlet at δ 14.59 corresponds to –COOH group. Further, the LC-MS showed its molecular ion peaks at 363.3 (M+H) which is in accordance with its molecular formula C16H12ClFN4O3.
The structure of compound 3 was interpreted by its IR, 1H- and 13C-NMR analyses. The IR spectrum of 3 revealed the presence of –NH2 group due to the appearance of strong band at 3302 cm−1. In its 1H-NMR spectrum the appearance of a singlet at δ 5.99 confirmed the presence of newly introduced –NH2 group. The 13C-NMR signal at 102.00 corresponds –CH– flanked by two oxygen atoms. The structure of compound 4 was confirmed by IR, 1H-NMR and LC-MS analyses. In the IR spectrum strong absorbance peak at 1668 cm−1 indicates newly introduced amide functional group. In the 1H-NMR spectrum peak δ 12.03 confirmed the newly introduced amide group. Further, the LC-MS showed its molecular ion peaks at 462.5 (M+H), which is in accordance with its molecular formula C21H21ClFN5O4.
The structures of compounds 5a–f were interpreted by their IR, 1H- and 13C-NMR and LC-MS analyses. The IR spectrum of 5a revealed the presence of amide –C=O group due to the appearance of strong band at 1666 cm−1, while that of –C=C of aryl was observed at 1619 cm−1. In its 1H-NMR spectrum the appearance of a singlet at δ 2.25 confirmed the presence of newly introduced dimethyl amine functional group. Further, the LC-MS showed its molecular ion peaks at 471.5 (M+H), which is in accordance with its molecular formula C23H27FN6O4.
The structures of compounds 6a–f were elucidated by their IR, 1H-NMR and LC-MS analyses. The IR spectrum of 6a revealed the presence of hydroxamic group –C=O due to strong absorbance was observed at 1628 cm−1. The 1H-NMR spectrum of 6a showed singlet at δ 4.57, for two protons which correspond to –NCH2Ar and appearance of singlet δ 10.69 (which disappeared on D2O exchange) that corresponds to –OH proton of hydroxamic acid. The structure of 6a was further confirmed by LC-MS. It showed the molecular ion peak at m/z 387.5 (M+H), which conforms to its molecular formula C18H19FN6O3.
The physicochemical characteristics of the newly synthesized compounds are presented in Table 1.
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Compound | R1 | MF/MW | Yield (%) | mpa) (°C) |
6a | ![]() | C18H19FN6O3/386.39 | 84 | 188.1–182.3 |
6b | ![]() | C20H23FN6O3/414.44 | 87 | 215.4–217.6 |
6c | ![]() | C22H27FN6O3/442.50 | 90 | 184.2–185.1 |
6d | ![]() | C21H23FN6O3/426.45 | 86 | 192.1–193.4 |
6e | ![]() | C20H21FN6O4/428.43 | 88 | 250.5–255.7 |
6f | ![]() | C19H21FN6O3/400.42 | 75 | 221.4–222.6 |
a) Melting point of compounds at their decomposition.
All the newly synthesized compounds (6a–f) were evaluated for their in vitro antibacterial activities against human pathogens by means of standard twofold serial dilution method using agar media. The in vitro antibacterial activity was performed against three Gram positive bacterial strains including methicillin-sensitive S. aureus, Enterococcus faecalis, methicillin-resistant S. aureus, and three Gram-negative strains including Klebsiella pneumoniae. Ciprofloxacin and linezolid were used as reference standards.
The data generated from this study (Table 2) showed that none of the target compounds exhibited potency in inhibiting the growth of Gram-positive bacteria. However, the in vitro activity of compound 6e against Gram-negative bacteria such as E. coli, K. pneumonia and Moraxella catarrhalis are comparable to linezolid and less active when compared to ciprofloxacin.
Compound | Gram-positive panel MIC (µg/mL) | Gram-negative panel MIC (µg/mL) | ||||
---|---|---|---|---|---|---|
ATCC 29213 Staphylococcus aureus (MSSA) | ATCC 29212 Enterococcus faecalis | ATCC 33591 Staphylococcus aureus (MRSA) | ATCC 35218 Escherichia coli | ATCC 35657 Klebsiella pneumoniae | ATCC 25238 Moraxella catarrhalis | |
6a | >64 | >64 | >64 | >64 | >64 | >64 |
6b | 64 | 64 | >64 | 16 | 8 | 16 |
6c | 64 | 64 | >64 | 64 | 32 | 64 |
6d | >64 | >64 | >64 | 64 | 64 | 64 |
6e | >64 | >64 | >64 | 8 | 4 | 8 |
6f | >64 | >64 | >64 | >64 | >64 | >64 |
Linezolid | 4 | 16 | 2 | >64 | >64 | 8 |
Ciprofloxacin | 0.5 | 1 | 0.5 | 0.015 | 0.007 | 0.03 |
The antibacterial activity of compounds (6a–f) suggested that replacement of carboxylic acid with hydroxamic acid group at C-3 position of the fluoroquinolone completely reduced the antibacterial activity against Gram-positive strains. However, few of these compounds are (6c, d) are moderately active against Gram-negative strains.
Anti Cancer EvaluationAll compounds were screened for their in vitro anticancer activity against representative human cancer cell lines (A549: Lung adenocarcinoma; HeLa: Cervical adenocarcinoma; HCT-116: Colon carcinoma; PANC1: Pancreatic carninoma) obtained from American Type Culture Collection (ATCC). Suberoylanilide hydroxamic acid (SAHA) was used as reference standards.
The data generated from this study (Fig. 2) showed that among the six compounds, two compounds 6b and 6f are found to have better anticancer activity against A549, HeLa, HCT-116 and PANC1 cell lines. However, all the synthesized compounds are less potent when compared to marketed anticancer drug SAHA.
Percentage growth inhibition in different cell lines. A549: Lung adenocarcinoma; HeLa: Cervical adenocarcinoma; HCT-116: Colon carcinoma; PANC1: Pancreatic carcinoma.
The anticancer activity of compounds (6a–f) suggested that introduction of bulky alkyl amines reduced the anticancer activity when compared to less hindered alkyl amines i.e., isopropyl amine in compound 6f. Also diethyl amine in compound 6b is optimum to have good anticancer activity against A549 cell line.
A series of new hydroxamic acid derivatives (6a–f) at C-3 position of fluoroquinolones were designed and synthesized through multistep synthesis. The design concept involved replacement of the 3-carboxylic acid in fluoquinolones with hydroxamic acid as an acid mimicking group. The synthetic work employed in this work provides a good example for the synthesis of pure hydroxamic acid based fluoroquinoles. The new compounds were tested for their in vitro antimicrobial and anti-proliferative activity. Out of the six derivatives, compound 6e exhibited moderate antibacterial activity by inhibiting the growth of E. coli and K. pneumoniae (minimum inhibitory concentration (MIC): 4.00–8.00 µg/mL). The cancer activity of compounds 6b and 6f displayed good growth inhibition (30–40%) against A549 lung adenocarcinoma and HCT-116 colon carcinoma cell lines.
Chemicals were obtained from Sigma-Aldrich Co. Final purifications were carried out using Merck silica gel 230–400 mesh. TLC experiments were performed on alumina-backed silica gel 40 F254 plates (Merck, Darmstadt, Germany). The plates were illuminated under UV (254 nm) and KMnO4. Melting points were determined using Buchi B-540 and are uncorrected. All 1H- and 13C-NMR spectra were recorded on a Bruker AM-300 (300 MHz for 1H-NMR and 75 MHz for 13C-NMR), Bruker BioSpin Corp., Germany. Molecular weights of unknown compounds were checked by LC-MS 6200 series Agilent Technology. Chemical shifts are reported in ppm (δ) with reference to internal standard tetramethylsilane (TMS). The signals are designated as follows: s, singlet; d, doublet; t, triplet; m, multiplet; br s, broad singlet. IR Spectra were recorded using a Bruker Alpha Fourier transform (FT)-IR spectrometer using a diamond attenuated total reflectance (ATR) single reflectance module (24 scans).
Procedure for the Synthesis of 2-(Tetrahydro-pyran-2-yloxy)isoindole-1,3-dione (2′)To a solution of N-hydroxy phthalimide 1′ (150 g, 0.92 mol) in dichloromethane (3.0 L) were added 1,4-dioxane (2.0 L), p-toluenesulfonic acid (3.16 g, 0.02 mol) and dihydropyran (116 g, 1.36 mol) at 25–30°C. Reaction mass was stirred at 25–30°C over a period of 3 h. Completion of the reaction was monitored by TLC. Then reaction mass was quenched with 10% NaHCO3 solution (1.5 L) and layers were separated. Aqueous layer was further extracted with dichloromethane (3.0 L). Combined organic layer was washed with water (1.5 L) and brine (1.5 L). Organic layer was dried with sodium sulfate and volatiles were evaporated under reduced pressure to obtain compound 2′ as a white solid (220 g, 97%). mp 121–123°C; IR (ATR, cm−1) ν: 2937 (–C–H), 1733 (amide –C=O), 1376 (alkane –C–H), 693 (alkene =C–H); 1H-NMR (DMSO-d6 300 MHz) δ (ppm): 1.62–1.64 (3H, m, tetrahydropyran –CH2), 1.77–1.81 (2H, m, tetrahydropyran –CH2), 1.91–1.93 (1H, m, tetrahydropyran –CH2), 3.58 (1H, d, J=10.2 Hz, tetrahydropyran –OCH2), 4.28–4.33 (1H, m, tetrahydropyran –OCH2), 5.32 (1H, s, tetrahydropyran –OCH), 7.88 (4H, ArH); 13C-NMR (DMSO-d6 75 MHz) δ: 17.79, 24.79, 27.63, 61.81, 102.86, 123.72, 128.91, 135.31, 163.80; LC-MS (electrospray ionization (ESI), m/z): 248.1 (M+H).
Procedure for the Synthesis of O-(Tetrahydro-pyran-2-yl)hydroxylamine (3)To a solution of compound 2′ (200 g, 0.80 mol) in methyl tert-butyl ether (1.8 L), hydrazine hydrate (48.6 g, 0.97 mol) was added drop wise at 25–30°C. The resulting reaction mass refluxed at 80°C over a period of 1 h. Reaction completion was monitored by TLC. The resulting reaction mass was cooled to 10°C and reaction mass was filtered through celite pad to remove phthalimide impurities. Then filtrate was dried with sodium sulfate and concentrated. The product was further purified by high vacuum distillation (120°C, 1 mmHg) to obtain compound 3 (80 g, 84%) as colorless oil which was solidified upon storage at 4–8°C as a white solid. bp 307°C; IR (ATR, cm−1) ν: 3302 (–NH); 2939 (–C–H), 1595 (–C–H bend), 1032 (ether–C–O); 1H-NMR (DMSO-d6 300 MHz) δ (ppm): 1.43–1.44 (4H, m, tetrahydropyran –CH2), 1.54–1.65 (2H, m, tetrahydropyran –CH2), 3.40–3.46 (1H, m, tetrahydropyran –OCH2), 3.73–3.80 (1H, m, tetrahydropyran –OCH2), 4.56–4.57 (1H, m, tetrahydropyran –OCH), 5.99 (2H, s, –NH2); 13C-NMR (DMSO-d6 75 MHz) δ: 19.90, 25.48, 29.20, 61.76, 102.00. LC-MS (ESI, m/z): 118.2 (M+H).
Procedure for the Synthesis of 7-(4-Chloromethyl-[1,2,3]-triazol-1-yl)-1-cyclopropyl-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic Acid (2)To a solution of compound 1 (5.0 g, 12.8 mmol) in tetrahydrofuran (50.0 mL) was added lithium hydroxide (1.6 g, 38.4 mmol) in water (20.0 mL) at room temperature. Then the reaction mixture was allowed to stir at 60°C over a period of 2h. Completion of the reaction was monitored by TLC. Then volatiles were evaporated under reduced pressure, the crude mass obtained was diluted with water (50.0 mL), acidified with 1.0 N HCl (pH 3.0). Then acidic suspension was extracted with dichloromethane (2×100 mL), dried over sodium sulphate and concentrated under reduced pressure to obtain compounds 2 (4.2 g, 91%) as off-white solid. mp 219.7–224.8°C. IR (ATR, cm−1) ν: 3078 (–C–H), 1716 (acid –C=O), 1620 (–C=C), 1490 (alkane –C–H). 1H-NMR (DMSO-d6, 300 MHz) δ (ppm): 1.26–1.34 (4H, m, cyclopropyl –CH2), 3.94 (1H, br s, cyclopropyl –CH), 5.01 (2H, s, –CH2Cl), 8.38 (1H, d, J=10.5 Hz, ArH), 8.78 (1H, d, J=6.0 Hz, ArH), 8.83 (1H, s, triazole H), 8.93 (1H, s, ArH), 14.59 (1H, br s, –COOH); 13C-NMR (DMSO-d6 75 MHz) δ: 8.19, 36.35, 36.80, 108.21, 113.39 (d, J=21.75 Hz, C5-F coupling), 116.08, 126.44, 126.53, 126.58, 126.67, 129.70 (d, J=13.5 Hz, C7-F coupling), 138.50, 145.23, 149.96 and 153.31 (d, J=251.25 Hz, C6-F coupling), 150.22, 165.65, 176.95. LC-MS (ESI, m/z): 363.3 (M+H). Anal. Calcd for C16H12ClFN4O3: C, 52.98; H, 3.33; N, 15.45. Found: C, 52.95; H, 3.29; N, 15.44.
Preparation of 7-(4-Chloromethyl-[1,2,3]triazol-1-yl)-1-cyclopropyl-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic Acid (Tetrahydro-pyran-2-yloxy)amide (4)To a suspension of compound 2 (2.5 g, 6.9 mmol) in dichloromethane (50 mL) were added triethyl amine (4.0 mL, 27.5 mmol) and ethyl chloroformate (0.64 mL, 8.2 mmol) at 0°C under nitrogen atmosphere. Then reaction mixture stirred at 0°C over a period of 30 min and compound 3 was added to the reaction mixture at same temperature. The reaction mixture was slowly allowed to reach room temperature (25°C) and continued stirring for a period of 1 h. Completion of the reaction was monitored by TLC. The resulting reaction mixture was diluted with dichloromethane (250 mL), washed with water (2×100 mL) and dried over sodium sulphate. The crude product obtained upon evaporation of the solvent was purified by silica gel column chromatography (5% methanol in dichloromethane) to obtain product 4 as pale yellow solid (2.6 g, 80%). mp: 188.2–191.1°C; IR (ATR, cm−1) ν: 2937 (–C–H), 1668 (amide –C=O), 1610 (–C=C), 1020 (alkane –C–F); 1H-NMR (DMSO-d6, 300 MHz) δ (ppm): 1.19–1.23 (2H, m, cyclopropyl –CH2), 1.31–1.33 (2H, m, cyclopropyl –CH2), 1.56 (3H, br s, tetrahydropyran –CH2), 1.73 (3H, br s, tetrahydropyran –CH2), 3.58–3.61 (1H, m, tetrahydropyran –OCH2), 3.86 (1H, br s, cyclopropyl –CH), 3.99–4.01 (1H, m, tetrahydropyran –OCH2), 5.00 (3H, br s, –CH2Cl, tetrahydropyran –O–CH–O), 8.30 (1H, d, J=10.8 Hz, ArH), 8.67 (1H, d, J=6.0 Hz, ArH), 8.73 (1H, s, triazole H), 8.90 (1H, s, ArH), 12.03 (1H, s, –CONH); 13C-NMR (DMSO-d6 75 MHz) δ: 8.43, 18.36, 25.07, 27.97, 35.32, 35.65, 102.12, 111.63, 112.76, 114.81 (d, J=22.5 Hz, C5-F coupling), 124.12 (d, J=11.2 Hz, C10-F coupling), 127.84, 128.78 (d, J=12.75 Hz, C7-F coupling), 137.69, 146.06, 148.11, 148.46, 151.79 (d, J=249.75 Hz, C6-F coupling), 161.92, 174.21; LC-MS (ESI, m/z): 378.9 (M-dihydropyran+H), 462.5 (M+H). Anal. Calcd for C21H21ClFN5O4: C, 54.61; H, 4.58; N, 15.16. Found: C, 54.53; H, 4.59; N, 15.16.
General Procedure for the Preparation of 1-Cyclopropyl-6-fluoro-7-(4-alkylaminomethyl-[1,2,3]triazol-1-yl)-4-oxo-1,4-dihydroquinoline-3-carboxylic Acid (Tetrahydro-pyran-2-yloxy)amides (5a–f)To a solution of compound 4 (200 mg, 0.43 mmol) in N,N-dimethylformamide (5.0 mL) was added triethylamine (156 µL, 1.08 mmol), potassium iodide (29 mg, 0.17 mmol) and the corresponding amine (1.08 mmol) at ice bath temperature. After stirring at ice bath temperature for 10 min, the reaction mass was allowed to stir at room temperature over a period 4–6 h. After completion of reaction, reaction mass was diluted with ethyl acetate (300 mL), washed with water (3×25 mL) and dried over sodium sulphate. The residue obtained upon evaporation of the solvent was further purified by silica gel column chromatography using methanol–chloroform) as the eluent.
1-Cyclopropyl-7-(4-dimethylaminomethyl-[1,2,3]triazol-1-yl)-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic Acid (Tetrahydro-pyran-2-yloxy)amide (5a): This compound was prepared by reaction of compound 4 with dimethyl amine in the presence of triethylamine and potassium iodide. It was obtained as a pale yellow solid (176 mg, 87%), mp: 198.5–204.1°C; IR (ATR, cm−1) ν: 2937 (ArH), 1666 (amide –C=O), 1610 (–C=C), 1480 (–C–O), 1020 (–C–F); 1H-NMR (DMSO-d6 300 MHz) δ (ppm): 1.19–1.22 (2H, m, cyclopropyl –CH2), 1.31–1.33 (2H, m, cyclopropyl –CH2), 1.56 (3H, br s, tetrahydropyran –CH2), 1.73 (3H, br s, tetrahydropyran –CH2), 2.25 (6H, s, –N(CH3)2), 3.58–3.61 (1H, m, tetrahydropyran –OCH2), 3.69 (2H, s, –CH2–N), 3.87 (1H, br s, cyclopropyl –CH), 3.99 (1H, br s, tetrahydropyran –O–CH2), 4.99 (1H, s, tetrahydropyran –O–CH–O), 8.28 (1H, d, J=10.8 Hz, ArH), 8.64–8.68 (2H, m, ArH), 8.73 (1H, s, triazole H), 12.02 (1H, s, –CONH); 13C-NMR (75 MHz, DMSO-d6) δ: 8.40, 18.36, 25.07, 27.97, 35.30, 45.08, 54.08, 60.42, 102.09, 111.51, 112.59, 114.69 (d, J=21.75 Hz, C5-F coupling), 124.08 (d, J=12.0 Hz, C10-F coupling), 127.51 (d, J=6.75 Hz, C7-F coupling), 129.20, 137.69, 146.21, 148.01, 148.54 & 151.80 (d, J=244.5 Hz, C6-F coupling), 161.97, 174.22; LC-MS (ESI, m/z): 471.5 (M+H). Anal. Calcd for C23H27FN6O4: C, 58.71; H, 5.78; N, 17.86. Found: C, 58.68; H, 5.80; N, 17.84.
1-Cyclopropyl-7-(4-diethylaminomethyl-[1,2,3]triazol-1-yl)-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic Acid (Tetrahydro-pyran-2-yloxy)amide (5b): This compound was prepared by reaction of compound 4 with diethyl amine in the presence of triethylamine and potassium iodide. It was obtained as a pale yellow solid (170 mg, 79%), mp 201.8–203.4°C; IR (ATR, cm−1) ν: 3010 (ArH), 1671 (amide –C=O), 1614 (–C=C), 1481 (–C–O), 1034 (–C–F); 1H-NMR (DMSO-d6 300 MHz) δ (ppm): 1.07 (6H, t, J=6.9 Hz, diethylamine –CH3), 1.19–1.23 (2H, m, cyclopropyl –CH2), 1.31–1.33 (2H, m, cyclopropyl –CH2), 1.56 (3H, br s, tetrahydropyran –CH2), 1.74 (3H, br s, tetrahydropyran –CH2), 2.50 (4H, q, J=6.9 Hz, diethylamine –NCH2), 3.58–3.61 (1H, m, tetrahydropyran –OCH2), 3.87–3.99 (4H, m, cyclopropyl –CH, –CH2–N, tetrahydropyran –O–CH2), 4.99 (1H, s, tetrahydropyran –O–CH–O), 8.28 (1H, d, J=10.8 Hz, ArH), 8.64–8.66 (2H, m, ArH), 8.73 (1H, s, triazole H), 12.02 (1H, s, –CONH); 13C-NMR (75 MHz, DMSO-d6) δ: 8.41, 14.54, 18.37, 25.07, 27.96, 35.32, 46.23, 55.12, 62.21, 102.07, 111.46, 112.51, 114.69 (d, J=21.75 Hz, C5-F coupling), 123.72 (d, J=11.20 Hz, C10-F coupling), 127.43, 129.21 (d, J=12.70 Hz, C7-F coupling), 137.69, 147.34, 148.51 & 151.82 (d, J=248.25 Hz, C6-F coupling), 162.32, 174.24; LC-MS (ESI, m/z): 499.6 (M+H). Anal. Calcd for C25H31FN6O4: C, 60.23; H, 6.27; N, 16.86. Found: C, 60.25; H, 6.31; N, 16.83.
1-Cyclopropyl-7-(4-dipropylaminomethyl-[1,2,3]triazol-1-yl)-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic Acid (Tetrahydro-pyran-2-yloxy)amide (5c): This compound was prepared by reaction of compound 4 with dipropyl amine in the presence of triethylamine and potassium iodide. It was obtained as an off-white solid (175 mg, 77%), mp 183.2–187.8°C; IR (ATR, cm−1) ν: 2957 (ArH), 1668 (amide –C=O), 1609 (–C=C), 1476 (–C–O), 1018 (–C–F); 1H-NMR (DMSO-d6 300 MHz) δ (ppm): 0.86 (6H, t, J=7.2 Hz, dipropylamine –CH3), 1.20 (2H, br s, cyclopropyl –CH2), 1.30–1.33 (2H, m, cyclopropyl –CH2), 1.51–1.57 (7H, br s, dipropylamine –CH2, tetrahydropyran –CH2), 1.74 (3H, br s, tetrahydropyran –CH2), 2.38–2.40 (4H, m, dipropylamine –NCH2), 3.58–3.61 (1H, m, tetrahydropyran –OCH2), 3.82–3.99 (4H, m, cyclopropyl –CH, –CH2–N, tetrahydropyran –O–CH2), 4.99 (1H, s, tetrahydropyran –O–CH–O), 8.30 (1H, d, J=10.8 Hz, ArH), 8.64–8.66 (2H, m, ArH), 8.74 (1H, s, triazole H), 12.04 (1H, s, –CONH); 13C-NMR (75 MHz, DMSO-d6) δ: 8.44, 11.83, 18.35, 20.31, 25.06, 27.96, 35.30, 48.76, 55.85, 62.15, 102.06, 111.46, 112.51, 114.62 (d, J=21.75 Hz, C5-F coupling), 123.72 (d, J=11.25 Hz, C10-F coupling), 127.43, 129.23 (d, J=12.75 Hz, C7-F coupling), 137.69, 147.34, 147.99, 148.52 and 151.83 (d, J=248.25 Hz, C6-F coupling), 161.97, 174.25; LC-MS (ESI, m/z): 527.3 (M+H). Anal. Calcd for C27H35FN6O4: C, 61.58; H, 6.70; N, 15.96. Found: C, 61.61; H, 6.74; N, 15.94.
1-Cyclopropyl-6-fluoro-4-oxo-7-(4-piperidin-1-ylmethyl-[1,2,3]-triazol-1-yl)-1,4-dihydroquinoline-3-carboxylic Acid (Tetrahydro-pyran-2-yloxy)amide (5d): This compound was prepared by reaction of compound 4 with piperidine in the presence of triethylamine and potassium iodide. It was obtained as a off-white solid (160 mg, 73%), mp 195.2–196.5°C; IR (ATR, cm−1) ν: 2959 (ArH), 1668 (acid –C=O), 1614 (–C=C), 1477 (–C–O), 1025 (–C–F); 1H-NMR (DMSO-d6 300 MHz) δ (ppm): 1.19–1.23 (2H, m, cyclopropyl –CH2), 1.31–1.33 (2H, m, cyclopropyl –CH2), 1.35–1.55 (9H, m, piperidine –CH2, tetrahydropyran –CH2), 1.73 (3H, br s, tetrahydropyran –CH2), 2.50 (4H, br s, piperidine –NCH2), 3.58–3.68 (3H, m, tetrahydropyran –OCH2, –CH2–N), 3.87 (1H, br s, cyclopropyl –CH), 3.99 (1H, br s, tetrahydropyran –O–CH2), 4.99 (1H, s, tetrahydropyran –O–CH–O), 8.29 (1H, d, J=10.8 Hz, ArH), 8.64–8.66 (2H, m, ArH), 8.73 (1H, s, triazole H), 12.04 (1H, s, –CONH); 13C-NMR (75 MHz, DMSO-d6) δ: 8.44, 15.54, 18.36, 21.28, 25.08, 27.96, 35.31, 46.68, 54.12, 62.16, 102.08, 111.46, 112.50, 114.69 (d, J=21.75 Hz, C5-F coupling), 123.72 (d, J=11.25 Hz, C10-F coupling), 127.45, 129.24 (d, J=6.75 Hz, C7-F coupling), 137.70, 147.35, 148.52 and 151.83 (d, J=248.25 Hz, C6-F coupling), 162.22, 174.24; LC-MS (ESI, m/z): 511.7 (M+H). Anal. Calcd for C26H31FN6O4: C, 61.16; H, 6.12; N, 16.46; Found: C, 61.20; H, 6.13; N, 16.44.
1-Cyclopropyl-6-fluoro-7-(4-morpholin-4-ylmethyl-[1,2,3]triazol-1-yl)-4-oxo-1,4-dihydroquinoline-3-carboxylic Acid (Tetrahydro-pyran-2-yloxy)amide (5e): This compound was prepared by reaction of compound 4 with morpholine in the presence of triethylamine and potassium iodide. It was obtained as pale yellow solid (196 mg, 89%), mp 192.6–193.5°C; IR (ATR, cm−1) ν: 2939 (ArH), 1670 (amide –C=O), 1612 (–C=C), 1478 (–C–O), 1024 (–C–F); 1.19–1.23 (2H, m, cyclopropyl –CH2), 1.31–1.33 (2H, m, cyclopropyl –CH2), 1.56 (3H, br s, tetrahydropyran –CH2), 1.73 (3H, br s, tetrahydropyran –CH2), 3.33 (4H, br s, morpholine –NCH2), 3.59 (5H, br s, tetrahydropyran –OCH2, morpholine –OCH2), 3.71 (2H, s, –CH2–N), 3.86 (1H, br s, cyclopropyl –CH), 3.99 (1H, br s, tetrahydropyran –O–CH2), 4.99 (1H, s, tetrahydropyran –O–CH–O), 8.28 (1H, d, J=10.8 Hz, ArH), 8.64–8.69 (2H, m, ArH), 8.73 (1H, s, triazole H), 12.03 (1H, s, –CONH); 13C-NMR (75 MHz, DMSO-d6) δ: 8.40, 18.37, 25.07, 27.97, 35.31, 48.76, 55.12, 62.14, 62.43, 73.11, 102.09, 111.47, 112.50, 114.64 (d, J=21.75 Hz, C5-F coupling), 123.70, (d, J=13.50 Hz, C10-F coupling), 127.42, 129.22 (d, J=12.75 Hz, C7-F coupling), 137.70, 147.32, 148.53 and 151.84 (d, J=248.25 Hz, C6-F coupling), 162.42, 174.26; LC-MS (ESI, m/z): 513.2 (M+H). Anal. Calcd for C25H29FN6O5: C, 58.58; H, 5.70; N, 16.40. Found: C, 58.60; H, 5.74; N, 16.38.
1-Cyclopropyl-6-fluoro-7-[4-(isopropylamino-methyl)-[1,2,3]triazol-1-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic Acid (Tetrahydro-pyran-2-yloxy)amide (5f): This compound was prepared by reaction of compound 4 with isopropyl amine in the presence of triethylamine and potassium iodide. It was obtained as pale yellow solid (145 mg, 69%), mp 186.5–187.8°C; IR (ATR, cm−1) ν: 2964 (ArH), 1665 (amide –C=O), 1615 (–C=C), 1478 (acid –C–O), 1022 (–C–F); 1H-NMR (DMSO-d6 300 MHz) δ (ppm): 1.19 (6H, d, J=6.3 Hz, isopropyl amine –CH3), 1.19–1.23 (2H, m, cyclopropyl –CH2), 1.31–1.32 (2H, m, cyclopropyl –CH2), 1.56 (3H, br s, tetrahydropyran –CH2), 1.73 (3H, br s, tetrahydropyran –CH2), 2.89–2.91 (1H, m, isopropyl amine-NCH), 3.34–3.35 (1H, br s, –NH), 3.58–3.61 (1H, m, tetrahydropyran –OCH2), 3.87–3.99 (4H, m, cyclopropyl –CH, –CH2–N, tetrahydropyran –O–CH2), 4.99 (1H, s, tetrahydropyran –O–CH–O), 8.29 (1H, d, J=10.8 Hz, ArH), 8.63–8.68 (2H, m, ArH), 8.73 (1H, s, triazole H), 12.03 (1H, s, –CONH). 13C-NMR (75 MHz, DMSO-d6) δ: 8.40, 18.34, 18.95, 25.06, 27.97, 35.30, 38.64, 55.87, 62.20, 102.09, 111.51, 112.52, 114.62 (d, J=21.75 Hz, C5-F coupling), 123.72 (d, J=11.25 Hz, C10-F coupling), 127.42, 129.28 (d, J=12.75 Hz, C7-F coupling), 137.70, 147.35, 148.51 and 151.82 (d, J=248.25 Hz, C6-F coupling), 162.15, 174.22; LC-MS (ESI, m/z): 485.4 (M+H). Anal. Calcd for C24H29FN6O4: C, 59.49; H, 6.03; N, 17.34. Found: C, 59.52; H, 6.11; N, 17.31.
General Procedure for the Synthesis of 1-Cyclopropyl-7-(4-alkylaminomethyl-[1,2,3]triazol-1-yl)-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic Acid Hydroxyamides (6a–f)To a solution of 2 N hydrochloric acid (10.0 mL) was added compounds 5a–f (0.5 mmol) at room temperature. The resulting suspension was allowed to stir at 25°C over a period of 12 h. The completion of the reaction was monitored by TLC. The solids obtained upon evaporation of the volatiles under reduced pressure were washed with diethyl ether (2×10 mL).
1-Cyclopropyl-7-(4-dimethylaminomethyl-[1,2,3]triazol-1-yl)-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic Acid Hydroxyamide (6a): This compound was prepared by de-protection of tetrahydropyranyl group of compound 5a with 2 M hydrochloric acid. It was obtained as a yellow solid, IR (ATR, cm−1) ν: 2968 (ArH), 2492 (–OH), 1628 (–C=O), 1611 (–C=C), 1452 (–C–O), 1043 (–C–F); 1H-NMR (DMSO-d6 300 MHz) δ (ppm): 1.18–1.23 (2H, m, cyclopropyl –CH2), 1.32–1.33 (2H, m, cyclopropyl –CH2), 2.82 (6H, s, N(CH3)2), 3.87 (1H, br s, cyclopropyl –CH), 4.57 (2H, s, –NCH2), 8.33 (1H, d, J=10.8 Hz, ArH), 8.69 (1H, d, J=6.3 Hz, ArH), 8.76 (1H, s, triazole H), 9.01 (1H, s, ArH), 10.69 (1H, br s, –NHOH), 11.50 (1H, s, –CONH). LC-MS (ESI, m/z): 387.5 (M+H). Anal. Calcd for C18H19FN6O3: C, 55.95; H, 4.96; N, 21.75. Found: C, 55.98; H, 5.11; N, 21.73.
1-Cyclopropyl-7-(4-diethylaminomethyl-[1,2,3]triazol-1-yl)-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic Acid Hydroxyamide (6b): This compound was prepared by de-protection of tetrahydropyranyl group of compound 5b with 2 M hydrochloric acid. It was obtained as a pale yellow solid, IR (ATR, cm−1) ν: 2942 (ArH), 2538 (–OH), 1627 (–C=O), 1617 (–C=C), 1479 (–C–O), 1030 (–C–F); 1H-NMR (DMSO-d6 300 MHz) δ (ppm): 1.19 (2H, br s, cyclopropyl –CH2), 1.31 (2H, br s, cyclopropyl –CH2), 1.34 (6H, t, J=6.9 Hz, diethylamine –CH3), 3.13 (4H, q, J=6.9 Hz, diethylamine –NCH2), 3.86 (1H, br s, cyclopropyl –CH), 4.58 (2H, s, CH2–N), 8.32 (1H, d, J=11.1 Hz, ArH), 8.69 (1H, d, J=11.1 Hz, ArH), 8.75 (1H, s, triazole H), 9.08 (1H, s, ArH), 10.86 (1H, br s, –NHOH), 11.49 (1H, s, –CONH). LC-MS (ESI, m/z): 499.6 (M+H). Anal. Calcd for C20H23FN6O3: C, 57.96; H, 5.59; N, 20.28. Found: C, 57.98; H, 5.60; N, 20.25.
1-Cyclopropyl-7-(4-dipropylaminomethyl-[1,2,3]triazol-1-yl)-6-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylic Acid Hydroxyamide (6c): This compound was prepared by de-protection of tetrahydropyranyl group of compound 5c with 2 M hydrochloric acid. It was obtained as a pale yellow solid. IR (ATR, cm−1) ν: 2968 (ArH), 2492 (–OH), 1628 (–C=O), 1611 (–C=C), 1452 (–C–O), 1043 (–C–F); 1H-NMR (DMSO-d6 300 MHz) δ (ppm): 0.95 (6H, t, J=6.9 Hz, dipropylamine –CH3), 1.20–1.23 (2H, m, cyclopropyl –CH2), 1.31–1.33 (2H, m, cyclopropyl –CH2), 1.79–1.83 (4H, m, dipropylamine –CH3), 3.02–3.04 (4H, m, –dipropylamine –NCH2), 3.87 (1H, m, cyclopropyl –CH), 4.59 (2H, s, –CH2–N), 8.33 (1H, d, J=11.7 Hz, ArH), 8.70 (1H, d, J=6.0 Hz, ArH), 8.76 (1H, s, triazole H), 9.08 (1H, s, ArH), 10.54 (1H, br s, –NHOH), 11.50 (1H, s, –CONH). LC-MS (ESI, m/z): 499.6 (M+H). Anal. Calcd for C22H27FN6O3: C, 59.72; H, 6.15; N, 18.99. Found: C, 59.75; H, 6.17; N, 18.98.
1-Cyclopropyl-6-fluoro-4-oxo-7-(4-piperidin-1-ylmethyl-[1,2,3]triazol-1-yl)-1,4-dihydroquinoline-3-carboxylic Acid Hydroxyamide (6d): This compound was prepared by de-protection of tetrahydropyranyl group of compound 5d with 2 M hydrochloric acid. It was obtained as a off-white solid. IR (ATR, cm−1) ν: 2942 (ArH), 2541 (–OH), 1628 (–C=O), 1611 (–C=C), 1494 (acid –C–O), 1033 (–C–F); 1H-NMR (DMSO-d6 300 MHz) δ (ppm): 1.19 (2H, br s, cyclopropyl –CH2), 1.32–1.34 (2H, m, cyclopropyl –CH2), 1.68–1.80 (6H, m, piperidine –CH2), 2.95–2.98 (2H, m, piperidine –CH2), 3.41–3.45 (2H, m, piperidine –CH2), 3.87 (1H, br s, cyclopropyl –CH), 4.53 (2H, s, –CH2–N), 8.32 (1H, d, J=10.8 Hz, ArH), 8.70 (1H, d, J=4.8 Hz, ArH), 8.75 (1H, s, triazole H), 9.05 (1H, s, ArH), 10.90 (1H, br s, –NHOH), 11.49 (1H, s, –CONH). LC-MS (ESI, m/z): 427.5 (M+H). Anal. Calcd for C21H23FN6O3: C, 59.15; H, 5.44; N, 19.71. Found: C, 59.15; H, 5.45; N, 19.70.
1-Cyclopropyl-6-fluoro-7-(4-morpholin-4-ylmethyl-[1,2,3]triazol-1-yl)-4-oxo-1,4-dihydroquinoline-3-carboxylic Acid Hydroxyamide (6e): This compound was prepared by de-protection of tetrahydropyranyl group of compound 5e with 2 M hydrochloric acid. It was obtained as a yellow solid. IR (ATR, cm−1) ν: 2958 (ArH), 2541 (–OH), 1628 (–C=O), 1610 (–C=C), 1489 (–C–O), 1007 (–C–F); 1H-NMR (DMSO-d6 300 MHz) δ (ppm): 1.19 (2H, br s, cyclopropyl –CH2), 1.33 (2H, br s, cyclopropyl –CH2), 3.21 (2H, br s, morpholine –NCH2), 3.39 (2H, br s, morpholine –NCH2), 3.78 (2H, br s, morpholine –OCH2), 3.97 (3H, br s, morpholine –OCH2, cyclopropyl –CH), 4.63 (2H, s, –NCH2), 8.32 (1H, d, J=9.6 Hz, ArH), 8.69 (1H, br s, ArH), 8.75 (1H, s, triazole H), 9.05 (1H, s, ArH), 11.49 (1H, s, –CONH), 11.66 (1H, br s, –NHOH). LC-MS (ESI, m/z): 513.2 (M+H). Anal. Calcd for C20H21FN6O4: C, 56.07; H, 4.94; N, 19.62. Found: C, 56.11; H, 4.99; N, 19.60.
1-Cyclopropyl-6-fluoro-7-[4-(isopropylamino-methyl)-[1,2,3]triazol-1-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic Acid Hydroxyamide (6f): This compound was prepared by de-protection of tetrahydropyranyl group of compound 5f with 2 M hydrochloric acid. IR (ATR, cm−1) ν: 2967 (ArH), 2509 (–OH), 1622 (–C=O), 1610 (–C=C), 1452 (–C–O), 1007 (–C–F); 1H-NMR (DMSO-d6 300 MHz) δ (ppm): 1.19–1.23 (2H, m, cyclopropyl –CH2), 1.31–1.32 (2H, m, cyclopropyl –CH2), 1.33 (6H, d, J=6.3 Hz, isopropyl amine –CH3), 3.35–3.36 (1H, m, isopropyl amine –NCH), 3.87 (1H, br s, cyclopropyl –CH), 4.42 (2H, s, –CH2–N), 8.33 (1H, d, J=10.8 Hz, ArH), 8.64 (1H, d, J=6.0 Hz, ArH), 8.76 (1H, s, triazole H), 8.98 (s, ArH), 9.35 (3H, br s,–NHOH, isopropyl –NH2+), 11.49 (1H, s, –CONH); LC-MS (ESI, m/z): 401.0 (M+H). Anal. Calcd for C19H21FN6O3: C, 56.99; H, 5.29; N, 20.99. Found: C, 56.97; H, 5.60; N, 20.95.
Antibacterial AssayAll compounds were screened for their in vitro antibacterial activity against representative Gram-positive and Gram-negative strains, by means of standard twofold serial dilution method using agar media. MIC is defined as the minimum concentration of the compound required to give complete inhibition of bacterial growth after incubation at 35°C for 24 h.
Results InterpretationAfter incubation, readings are taken manually and the optical density is measured at 600 nm. The lowest concentration of the test item/s which prevents visible growth of a microorganism is considered as minimal inhibitory concentration.
Cell Proliferation AssayHuman cancer cell lines obtained from American Type Culture Collection (ATCC) were grown in appropriate medium supplemented with 10% fetal calf serum (FCS) and 100 U/mL penicillin, 100 µg/mL streptomycin. Cells were incubated in 5% CO2 atmosphere at 37°C. Cells were seeded in 96-well plates at a density of 5×103 cells per well in 100 µL and were allowed to attach for 24 h. Stock concentrations of the compounds were made in DMSO. One hundred microliters of media containing various concentrations of compounds (0.1, 1, 10 µM) were added to the cells and were incubated for 48 h. SAHA was tested as a reference compound in the assay. On the day of termination, 40 µL of 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-2H-tetrazolium bromide (MTT) (Sigma, St. Louis, MO, U.S.A.) solution (5 mg/mL) was added to the medium and the cells were incubated for 3 h. The medium was then aspirated and 100% DMSO was added to solubilize the violet MTT-formazan product. The absorbance at 570 nm was measured by spectrophotometry (Biotek, Synergy HT 96-well plate reader). The assay was carried out in triplicates for each concentration. Results are expressed as percentage of growth inhibition with respect to the vehicle-treated control wells.
We are thankful to Anthem Biosciences Management, Anthem Biosciences, Bangalore, India, for their invaluable support and allocation of resources for this work. We would like thank Analytical Chemistry Team, Department of Analytical Chemistry, Anthem Biosciences, Bangalore, India, for having carried out all the analytical work. Also, we would like to thank Biology Team of Anthem Biosciences for executing the anti-bacterial and anti-proliferative studies.