低温生物工学会誌
Online ISSN : 2424-1555
Print ISSN : 1340-7902
分子動力学シミュレーションを用いたGroup3LEAペプチドのタンパク質凝集抑制機能の解析
山川 賢太郎古木 隆生櫻井 実
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2011 年 57 巻 2 号 p. 143-146

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Group 3 late embryogenesis abundant (G3LEA) proteins have repeating sequences composed of characteristic 11-mer motif and are likely to act as a protectant against desiccation-induced aggregation of proteins in anhydrobiotic organisms. However, its molecular mechanism remains unclear. In this study, we first show experimentally that a LEA-model peptide, composed of two repeats of the 11-mer motif, prevents the aggregation of lysozyme induced by desiccation. Next, to interpret this result at atomic level, we study the structure of the LEA-model and its interaction with lysozyme by means of both all-atom and coarse-grained molecular dynamics simulations. It is shown that the LEA model preferentially adopts a turn structure in water, but by addition of lysozyme its structure is transformed into an extended one to bind to the surface of lysozyme. In conclusion, the LEA-model can protect lysozyme from aggregation by shielding the protein surface to inhibit protein-protein direct contact.
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© 2011 低温生物工学会
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