Circulation Journal
Online ISSN : 1347-4820
Print ISSN : 1346-9843
ISSN-L : 1346-9843
Reviews
Strengths and Opportunities of Network Medicine in Cardiovascular Diseases
Giuditta BenincasaRaffaele MarfellaNunzia Della MuraConcetta SchianoClaudio Napoli
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2020 年 84 巻 2 号 p. 144-152

詳細
Abstract

Network medicine can advance current medical practice by arising as response to the limitations of a reductionist approach focusing on cardiovascular (CV) diseases as a direct consequence of a single defect. This molecular-bioinformatic approach integrates heterogeneous “omics” data and artificial intelligence to identify a chain of perturbations involving key components of multiple molecular networks that are closely related in the human interactome. The clinical view of the network-based approach is greatly supported by the general law of molecular interconnection governing all biological complex systems. Recent advances in bioinformatics have culminated in numerous quantitative platforms able to identify CV disease modules underlying perturbations of the interactome. This might provide novel insights in CV disease mechanisms as well as putative biomarkers and drug targets. We describe the network-based principles and discuss their application to classifying and treating common CV diseases. We compare the strengths and weaknesses of molecular networks in comparison with the classical current reductionist approach, and remark on the necessity for a two-way approach connecting network medicine with large clinical trials to concretely translate novel insights from bench to bedside.

Reductionism has been extremely successful in modern medicine by providing enormous advantages in identifying specific abnormalities and targeted treatments.1 However, it has been accused of oversimplifying our models of cardiovascular (CV) diseases, leading to loss of information about all the molecular determinants and their interactions with the environment, making us not sufficiently ready for precision medicine.1 Our contemporary viewpoint of CV diseases takes account individual habits, diet, living conditions, comorbidities, and stress leading to heart dysfunction, which cannot be predicted by the investigation of the single parts alone. Now, systems biology can address the dynamic relationship between the single parts of a biological system by shifting the attention to the whole system, to complement reductionism.1

After the first proof of concept paper,2 Barabási coined and popularized the term “network medicine”, which combines systems biology and network science to discover the molecular drivers of human diseases. Network medicine is a holistic approach able to study cells, complex diseases, and social networks in a quantitative manner by focusing on the molecular pathways contributing to onset and progression of CV diseases.3 This approach reflects the fact that human phenotypes as well as CV traits are driven by complex interactions among a variety of molecular determinants that have to be analyzed at multiple levels, including genome, transcriptome, proteome, epigenome, metabolome, microbiome, exposome, and foodome.3 Here, we introduce the basic elements of network medicine and emphasize strenghts and opportunities in CV diseases with respect to classical analytical methods. Moreover, we introduce the “3P-REVOLUTION”, the acronym of Physicians Perception and Perspective on the care: REnewal from ValidatiOn of aLgorithms by Unifying clinical Trials and Informatics to cOnceive Network medicine. Our message is that a sort of “new French insurrection” is needed to concretely shift from the current reductionism to personalized CV care.

Human Interactome, Biological Networks, Nodes, and Edges

The basic hypothesis of network medicine is that a complex disease results from one or more perturbed molecular networks that are interconnected in the human interactome of disease-related organs (or tissues) and deregulated by genetic and/or environmental changes.3,4 Thus, network medicine can use the interactome to explore human disease etiology.3,4 We reported some basic principles of network topology analysis to introduce readers to network medicine (see Menche et al5 for more detailed information). A biological network is a set of points (nodes) that are linked in pairs by lines (edges). Nodes can represent genes, proteins, and metabolites, whereas edges represent the physical or functional relationships among them, leading to a map that is visualized and analyzed using graph theory (Figure 1).3,5,6 These networks form robust and overlapping molecular circuits able to govern changes in cardiac gene expression in a spatial-temporal manner.3,6

Figure 1.

Human interactome, nodes, and edges. Network medicine has its roots in the molecular interconnections, mainly of proteins, occurring in cells, tissue and organs, known as the human interactome. The basic elements of network analysis are nodes (often shown as circles) and edges, which represent a physical or functional relationship between nodes. Blank circles in Box 1 represent genes (or proteins) that are topologically close in the interactome. In Box 2, red circles represent known genes, or “seed genes” useful to unveil novel gene-gene interactions. By using network algorithms, it is possible to identify novel candidate genes (blue circles in Box 3) through their interactions with seed genes and visualize the cluster in discrete modules of the interactome.

Hypothesis of Disease Network Modules

According to the hypothesis of disease network modules, nodes that are strongly associated with a specific pathophenotype tend to interact and segregate together in a module (or local subnetwork) (Figure 1). This evidence is supported by different biological phenomena occurring in common CV diseases, such as locus heterogeneity, allelic heterogeneity, and variability of phenotype expression, emphasizing the need for customized treatments.3,5 Network medicine offers many modeling approaches to infer relevant disease-gene associations, starting with unbiased analysis of big data (Figure 2, Table 1).711 This approach has already led to tangible discoveries of putative key nodes and pathways underlying the perturbations of the CV interactome by enlarging the panel of drug targets or biomarkers.1217

Figure 2.

Flow chart of network analyses. For any specific disease, the pipeline consists of the following steps: (1) reconstruction of the interactome in tissues or cell line of interest; (2) disease gene identification (seed genes) through different sources, including OMIM, GWAS, literature; (3) disease module identification; (4) pathway identification; (5) validation of molecular mechanisms; and (6) prediction. GWAS, genome-wide association studies; OMIM, online Mendelian inheritance in man.

Table 1. Summary of the Main Algorithms Used in Network Medicine
Type of network /
Algorithm
Principle Availability Reference
PPIs
 GenePANDA (Gene Prioritizing
Approach using Network
Distance Analyses)
To identify novel candidate disease genes relying on their
relative distance in a functional association network
http://genepanda.tianlab.cn 7
 DIAMOnD (Degree-Aware
Disease Gene Prioritization)
To identify disease modules around a set of established
disease proteins based on the “connectivity significance”
instead of “connectivity density”
http://diamond.barabasilab.
com/
8
 Prodige (Prioritization Of
Disease Genes)
To prioritize genes by implementing a new machine learning
strategy based on a set of positive examples (e.g.,
established disease genes) and unlabeled examples
(e.g., candidate genes)
9
Regulatory
 PANDA (Passing Attributes
between Networks for Data
Assimilation)
To predict regulatory relationships by implementing a
message-passing model based on multiple types of
information, in order to reconstruct large-scale, disease-
specific regulatory networks in yeast as a model
http://www.sourceforge.net/
projects/panda-net
10
Co-expression
 WGCNA (Weighted Correlation
Network Analysis)
To identify modules of densely interconnected genes by
searching for genes with similar pattern of connectivity in
microarray data
http://www.inside-r.org/
packages/cran/WGCNA/
docs/bicor
11

lnc-RNA, long non-coding RNA; miRNA, micro-RNA; PPIs, protein-protein interactions.

Strengths and Pitfalls of Network Topology Analysis in CV Diseases

Strengths

Network topology analysis has several strengths with respect to the traditional reductionist approach in CV diseases (Table 2). First, the analysis of molecular networks rather than single genes results in a significant reduction of the noise and dimension of data, as well as greater biological interpretability about genotype-phenotype relationships.3,5 Importantly, network topology analysis abolishes some limitations in the current human datasets, in which molecular interactions are described without considering the whole context in which they operate. These powerful bioinformatic platforms are able to represent a great amount of heterogeneous big data in the form of relationships in a very simple and intuitive graphic map (Figure 1). For example, Cytoscape is an open-source software platform for visualizing complex networks and integrating these with gene expression data. The most important information arises from networks that are constructed in different time points showing subtle differences of gene expression profiles that really inform us about the molecular processes driving the pathogenesis of CV diseases.1820 Moreover, a huge amount of big data is collected and updated in open-to-public databases, such as GEO, KEGG, DisGeNET, STRING, which integrate information on gene-disease associations from various public repositories and literature.3,5 In particular, CardioVINEdb21 is a user-friendly independent web interface that can be used with any common web browser. Furthermore, a network-oriented approach can reveal the clinical diseasome to uncover novel mechanistic links between diseases that co-occur more than expected.22 This integrated approach has revealed that comorbidities are not causally related to chronic obstructive pulmonary disease but can share genes, proteins and biological pathways as well as risk factors (such as aging, smoking and/or inactivity), which are significantly interlinked in the network.23

Table 2. Overview of the Strengths and Pitfalls of Network Topology Analysis in CV Diseases
Strengths Pitfalls
Feasible visual representations Absence of translation from animal models to Phase 1 clinical trials
 Intuitive visual representations make crucial CV nodes or
modules immediately displayed (e.g., Cytoscape)
 In silico predicted disease networks should be validated in larger
cohorts of CV patients
Free online database Incompleteness of the interactome
 CardioVINEdb is a user-friendly platform containing a large set
of CV molecular interactions arising from different sources
 Global interconnections among the nodes are still not totally
known, leading to a gap in identification of disease modules
Novel candidate gene Limited knowledge of 3D protein structure
 Network-based analysis has successfully predicted novel CV
disease genes
 The 3D protein structure is not available for the majority of
human proteins, leading to challenges in prediction of outcomes
in drug-target interactions
Network robustness Reliance on the accuracy of GO datasets
 The network diameter measure can predict the behavior of a
complex biological system vs. perturbations
 GO annotation is both manual and computational-based and,
thus it is continuously evolving and affected by several bias
Molecular diseasome Low accuracy of “seed genes” selection
 The molecular diseasome is the representation of diseases that
are linked when they share associated genes or interaction
between proteins
 Most of the complex diseases do not have associated candidate
genes
Clinical diseasome Necessity of dynamic network
 The clinical diseasome is a global map representing the
interdependence among distinct human diseases when they
co-occur more than expected at random
 Network maps are static whereas the biological networks that
they represent are dynamic. Dynamic Bayesian algorithms may
offer novel opportunities but need further adjustments
Optimizing future drug discovery/drug repurposing Lack of standardized protocols
 Identification of network-based targets may aid in developing
novel drugs or repositioning approved drugs
 There are no guidelines on experimental standard procedures
and quality control programs

CV, cardiovascular; GO, gene ontology.

Pitfalls and Opportunities

Disease network discovery derives from the analysis of different data sources, mainly protein-protein interactions (PPIs), that are based on yeast two-hybrid systems and regulatory networks.3,5 Therefore, identification of molecular networks is not based on well-established causal relationships, making necessary extensive validation of in silico results by using animal models or human tissue and cell coltures.3,5 In particular, researchers can verify if the predicted disease module really exists by perturbing it through pharmacological (e.g., RNA interference) or genetic (CRISPR/Cas9) strategies.24 As confirm of computational findings, these perturbations should lead to a change in the phenotype.24 In this regard, the use of large animal models, such as dogs, pigs, sheep, and nonhuman primates could be considered before translating basic findings into Phase 1 clinical trials. To date, it is estimated that the human interactome only covers 20% of all potential pairwise interactions.5 Because network medicine has its roots in the topology of the interactome, its incompleteness is a great pitfall when basic findings are translated into the clinical arena. Several machine-learning (ML) algorithms are now providing additional PPIs to offer better reliability of results and novel opportunities for diagnostic tools.25 Importantly, current knowledge about the detailed 3D structure of proteins is limited leading to several challenges in predicting the outcomes of drug-target interactions, thus unexpected side effects continue to be a problem. This is a frequent cause of failure in clinical trials, where drugs that showed success in vitro fail when used in humans. Remarkably, systems biology has provided novel protein structure networks, treating a protein as a set of residues linked by edges that correspond to the intramolecular interactions.26 However, the clinical use of these platforms is challenged by the static view of the proteins that does not reflect the cellular dynamicity. Reliance on the accuracy of a gene ontology (GO) annotation library is another current gap for network medicine. GO terms represent a uniform vocabulary about the function of a particular gene by describing how a gene is regulated at the molecular level and what biological pathways it helps carry out.27 To date, researchers largely use GO enrichment methods to analyze high-throughput data and gain insight into the biological significance of alterations in gene expression levels. However, GO terms are assigned either by a human curator who performs careful, manual annotation or by computational approaches that use the basis of manual annotation to infer which terms would properly describe uncharted gene products.27 Thus, GO and its annotations are continuously evolving and affected by a strong bias that may alter interpretation and reproducibility of basic findings over time.27 As a consequence, specificity of a PPI pathway that regulates a particular cardiac endophenotype (e.g., hypertrophy, fibrosis, apoptosis) strongly hinges on the accuracy of the GO assignment. Some criticisms also derive from the selection of the “seed genes” based on genome-wide association studies (GWAS) that are unable to demonstrate the causal effect in the genotype-phenotype relationship.28 Another pitfall regards the static character of some bioinformatic tools that are not able to accurately predict the dynamic flow of perturbation through biological networks. In this regard, Bayesian networks are bioinformatic platforms providing dynamic models based on measures of specific variables in different series of samples and CV diseases.29,30 Of note, the absence of guidelines/recommendations for biospecimen sources, storage modality and data collection, as well as quality control programs, results in biological findings that are difficult to reproduce under different conditions.

Why Is It Important to Study the Role of PPIs in CV Diseases?

A large list of aberrant protein connectivity has already been reported by reductionist studies. One of the most representative examples of disease heterogeneity derives from inherited hypertrophic cardiomyopathy (HCM).31 This reality reflects how the reductionist strategies lack in clarifying the dynamic and adaptive features of the genome in the larger context of individual genotype-phenotype relationships. As emphasized by Maron et al,32 HCM represents a useful example for cardiologists to understand how the reductionism approach has strongly limited a heterogeneous CV disease to sarcomere gene mutations whereas network medicine may explain this disease in its global dimension. By using network-oriented analyses, we can show how genes interact with each other and unveil novel PPIs through known CV disease genes in the human interactome.3335

Strengths and Opportunities of Network Medicine in CV Diseases

Precision Medicine and “Phenomapping”

The need for personalized therapy in CV diseases arises from the high clinical heterogeneity characterizing CV patients. A multi-omics panel of network biomarkers may improve traditional population-based risk prediction algorithms (e.g., Framingham risk score) in order to identify high-risk subjects as well as patients with different diagnosis, prognosis, and response to specific drug treatments.36 The current reductionist approach has been somewhat successful and responsible for the most of the drugs currently used in common CV diseases.1,37 One of the main goals of network medicine is to provide biomarkers able to identify specific groups of patients that will benefit from a given therapeutic strategy rather than another avoiding side effects. Collections of biological materials (biobanks) and electronic health records (EHR) for each subject of large study population are becoming indispensable tools to really investigate causal molecular pathways associated with a CV trait.38 For example, large cohort studies (e.g., FHS) and human biobanks (e.g., UK, All of Us, and EmCAB) have provided a great amount of molecular/phenotypic data and biospecimens (blood samples, saliva, urine, tissue samples, genetic material), which are precious resources for translating experimental findings into the clinical setting (Figure 3A).38 Several challenges in network medicine also arise from the implementation of biobanks that generally offer population-specific information, such as genomic background. However, it should be also noted that particular nutrition habits can alter individual epigenetic profiles, making data not extendible to worldwide populations. By using the strategy of “deep molecular phenotyping”, network medicine aims to study a CV patient at each level of knowledge, including genetics, transcriptomics, proteomics, metabolomics, and epigenomics, as well as lifestyle habits (e.g., foodomics) and clinical information (Figure 3B).

Figure 3.

Deep phenotyping for precision medicine and personalized therapy of cardiovascular (CV) diseases. Established biobanks, such as All of Us Biobank (as part of President Obama’s Precision Medicine Initiative (PMI), https://allofus.nih.gov/). EmCABIOBANK, and UK BIOBANK, as well as consortia represent a great source of heterogeneous information about the heart and its health/disease state (A). For example, tissue biopsy and in particular liquid biopsy are tools to obtain genetic, epigenetic, metabolic, and proteomic data by using omics platforms. Imaging, lifestyle, dietary habits, heart measures, sociodemographic data and electronic health records (EHR) can complement big data (A), providing a “deep phenotyping” strategy (B) able to dissect the network of knowledge in each layer of information at the individual level. This has 2 main clinical implications in CV diseases: personalized therapy (C), in which network-oriented biomarkers may aid in stratifying the risk of CV events and treat patients with customized drugs and precision medicine (D), for which network-oriented biomarkers, phenomapping, and machine learning may be useful to prevent, diagnose and monitor CV patients.

As a result, it may be possible to build a “knowledge network” at the individual level, providing a map of the aberrant molecular signaling pathways interlinked with clinical features suggesting novel useful biomarkers for CV precision medicine (Figure 3C). Moreover, it is necessary to say that network medicine does not require the interactome per se; indeed, there are examples of using network medicine to unravel clinical phenotypes.39 Moreover, ML algorithms, such as neural networks and decision tree analysis, have been used to test their putative useful role in assisting diagnosis and clinical decision-making in CV diseases.40,41

Personalized Therapy

The traditional reductionism to drug development focuses on the “one-size-fits-all” approach to patient care that uses prevention strategy or treatment arising from observation of the mean general population.1 In contrast, CV personalized medicine focuses on the identification of “omics” biomarkers for risk prevention and prediction of therapeutic response (Figure 3D). How could network medicine improve CV personalized therapy? Because network medicine can reveal crucial molecular interconnections, it can be used to improve the discovery of novel drugs and molecular targets, as well as in silico drug repurposing.3 Experimental studies have investigated network-based approach to novel drug-target identification and drug repurposing useful for primary prevention and treatment of coronary heart disease. Recently, Lempiäinen et al42 constructed a co-expression network by integrating GWAS with PPI datasets, revealing novel targets for the current cardiometabolic drugs, including several kinase enzymes and GPCR genes for which drugs already existed, providing new opportunities for CHD treatment. To date, none of network-derived biomarkers, drug targets, or risk prediction models has been implemented in CV clinical care. Actually, network medicine is still labeled as basic research, leading to a real bottleneck effect (Figure 4). The main challenge is to translate basic findings into the CV clinical setting; thus, metanalysis of large prospective clinical trials is needed (Figure 4). Moreover, it should be recognized that there are other approaches currently being used to identify novel therapeutic targets, such as the “druggable genome”, that have already provided an important contribution to the concept of personalized medicine in CV research.43

Figure 4.

Clinical road ahead in network medicine. Today, network-oriented biomarkers are limited to preclinical validation in animal models or human tissue/cells, leading to a “bottleneck effect” that slows down the translation into clinical practice. Of course, network medicine needs meta-analyses of large prospective clinical trials, testing both the safety and efficacy of new putative drugs or biomarkers. Our acronym “3P-REVOLUTION” contains this message as well as emphasizing the importance of physician perception and perspective on patient care, an aspect that presents further challenges for network medicine, including the diffusion and the fidelity/acceptance/education of patients and physicians. 3P-REVOLUTION, Physician Perception and Perspective on care: REnewal from ValidatiOn of aLgorithms by Unifying clinical Trials and Informatics to cOnceive Network medicine.

“Foodome” Project: Soil for Epigenetics

The impact of dietary habits on medicine (the “foodome”) plays a significant role in quality of life, health and longevity. The term “foodome” refers to a collection of all chemical compounds present in an investigated food sample at a given time, including taste, smell, appearance, texture, and nutritional value. Moreover, large-scale computing and artificial intelligence (AI) have led to food ingredient databases that provide rich details on food contents at the chemical level as well as food trade databases that help to map food production and supply infrastructure. Network medicine is now focusing on the integration of this information to uncover new insights about the relationship between specific food chemicals and consumption behaviors, linking this to health and disease outcomes. Interestingly, the ongoing “Foodome” project (https://www.barabasilab.com/projects) aims to use AI to map, for any given food, its form, function, production, distribution, marketing, science, policy, history, and culture, as well as the connections among all these aspects. This human-ML approach may be useful to analyze foods preferentially consumed by each individual, providing important information about lifestyle, which is one of the most important risk factor for CV diseases.

A metabolomics platform profiled more than 40 foods, including meat, poultry, grains, fruits and vegetables to map food-derived compounds.44 The “food metabolome” is a field largely unexploited but with a great impact on the discovery of novel dietary biomarkers that could reveal hidden molecular networks linking food and health/disease states and then useful indicators of dietary exposures with a high level of precision. It is known that a balanced diet can help to prevent or treat CV risk factors, but how does food affect our health? Food components and their metabolites are emerging as key regulators of epigenetic-sensitive mechanisms, which in turn are linked to CV diseases.45 Several bioactive food compounds, such as resveratrol (RES), are involved in cardioprotection by modifying chromatin structure.46 RES, also known as an epigenetic-based drug (epidrug), is the most investigated plant secondary metabolite in the foodome era, for which several lines of evidence show its potential as a drug against CHD.46 RES is known for its antioxidant and anti-inflammatory properties and for its ability to upregulate the endothelial NO synthase (eNOS) gene by activating SIRT1, as histone deacetyltransferase (HDAC).47 However, further long-term clinical trials are needed to confirm its beneficial effect in CV diseases.47 This highlights the role of the epigenome as a sensible target and indicator of nutrient intake in CV diseases.47,48 Of course, the field of transgenerational effect deserves further investigation in clinical studies owing to its great potential to provide early molecular indicators for primary prevention of CV diseases.48 Thus, deciphering the influence of the foodome on endophenotypes involved in fetal reprogramming may be a novel challenge for network medicine.

Clinical Road Ahead in CV Diseases

Novel Perspectives From AI

AI is opening novel horizons in the network medicine approach to CV diseases. Based on probabilities rather than mechanistic findings, AI may provide potent platforms that improve prevention, diagnosis, prognosis and drug response in this field.50,51 In the Multi-Ethnic Study of Atherosclerosis (MESA) clinical trial, an integrated ML/deep phenotyping approach was tested to predict 6 CV outcomes in 6,814 asymptomatic subjects over 12 years of follow-up.52 By results, this ML platform showed high accuracy in predicting CV diseases; however, a deeper level of validation should be performed to translate these predictive models into clinical practice.52 Remarkably, AI is influencing the CV imaging diagnosis of subjects with suspected cardiomyopathies, with huge improvements at different levels ranging from appropriate patient selection, to image acquisition, post-processing and data extrapolation.53 Furthermore, by combining AI and cardiac computed tomography angiography data, a novel biomarker named the Fat Attenuation Index (FAITM) has been established.54 In detail, FAITM is a measure of adipocyte lipid content and size in the perivascular adipose tissue (PVAT) affected by intra-arterial inflammation that is responsive to statins and PCSK9i, suggesting improvements in personalized treatment.54 Despite current limitations in their clinical use, these efforts are of crucial relevance because a total knowledge of molecular interactions is very difficult to realize.

3P-REVOLUTION Challenge

Network medicine offers platforms that systematically explore the molecular complexity of a CV disease by identifying modules and pathways as well as the molecular/clinical relationships between distinct pathophenotypes.3,32,55 Of course, progress in this direction is essential to identify novel candidate genes, the functional role of GWAS SNPs, and epigenetic signatures that may provide useful circulating biomarkers, predictive models and novel drug targets.55 Moreover, another challenge comes from the possibility of applying network medicine to clarify the direct mechanistic link between transgenerational effects and CV diseases by studying high-risk families and circulating biomarkers at different time points to trace a longitudinal map of the epigenome with crucial clinical implications for primary prevention.49,50,55 Nevertheless, network medicine is a route very hard to walk because it does not represent only a computer-aided experimental setting but a radical new way of operating in modern CV medicine. Indeed, a “bottleneck effect” reflects the current progress in network medicine that is largely limited to basic findings only validated in animal models or human cells (Figure 4). As mentioned, we have introduced the term “3P-REVOLUTION”, which tries to emphasize the synergy of 3 components to really reach precision medicine of CV diseases, including physician evaluation and experience, bioinformatic tools, and clinical validation. Indeed, network-derived biomarkers and predictive computing models should be investigated in randomized long-term clinical trials to translate the basic discoveries from bench to CV bedside (Figure 4). Despite meaningful advance in clinical research, physicians’ perception and perspective on care again play a huge role in modern CV medicine. We would emphasize this point because this era of AI is a double-edged sword that may build an aseptic clinical reality. How physicians and patients will feel about using and trusting these advanced applications is an aspect that should not be overlooked. A recent published survey reported several concerns about the use of AI from pathologists, especially about the limited presence of digital platforms in many centers and the possibility of errors leading to medico-legal responsibility, suggesting that these will require further in-depth validation before effective implementation in daily clinical practice.56 Moreover, we note that several concerns arise from the “diffusion” of network-derived drugs and ML predictive models (Figure 4). Indeed, interactome-based therapy and ML tools might be available for a small number of CV diseases and relegated to universities and excellence centers rather than to wide diffusion to hospitals and home care (Figure 4). These criticisms arise from multiple and difficult ongoing challenges, including costs, time, and the necessity to educate both patients and physicians to accept and use these innovative strategies. Despite its great potential, it should be noted that AI cannot replace the relationship between physicians and their patients. Indeed, traditional fidelity in the physician-patient relationship remains the crucial “hub” of the history of medicine and represents an additional therapeutic tool that none of most advanced technological systems will ever be able to replace. Now there is no enough information to claim that this approach would be better than reductionism. The next step to implement the concept of 3P-REVOLUTION is make to use of several “European infrastructure development projects” (https://www.ecrin.org/activities/projects), for the successful exploitation of integrated omics data to reach personalized medicine in CV diseases. The challenges are to demonstrate the potential and benefits of network medicine for identifying new basic knowledge, facilitate multinational trials and decision making by linking relevant big data repositories while ensuring full compliance with data protection legislation and ethical principles.

Contributors

C.N. and G.B. contributed to the conception and design of the work. G.B., N.D.M. and C.S. researched the data in the literature and wrote the manuscript. C.N. and R.M. provided insights from their experience in CV diseases. C.N. and R.M. supervised and reviewed the final version of the manuscript.

Funding

This work was supported by “PRIN 2017” (project code 2017F8ZB89) from Italian Ministry of Health (PI Prof. Napoli). Dr. Benincasa is a PhD student of Translational Medicine awarded ESC Congress 2019 Travel Grant and she is supported by Educational Grant from the University of Campania, Naples, Italy. The funder had no role in the design and analysis, and interpretation of the data; preparation, review, or approval of the manuscript; and decision to submit the manuscript for publication.

Conflicts of Interest

The authors declare that there are no conflicts of interest.

References
 
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