Chemical and Pharmaceutical Bulletin
Online ISSN : 1347-5223
Print ISSN : 0009-2363
ISSN-L : 0009-2363
Communications to the Editor
Hydrophobic Scale: a Second Parameter to Elucidating Various Specific Ligand–Protein Interactions
Naganori Numao, Hisashi Fujii, Yoshiyuki Fukazawa, Nobutaka Hanagata, Kazuyoshi Tanaka
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ジャーナル フリー

2004 年 52 巻 3 号 p. 377-379

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In the sequence Fourier analysis (SFA) of specific interactions such as those between fibroblast growth factors (FGFs)/FGF receptors (FGFRs), bone morphogenetic proteins (BMPs)/BMP receptors (BMPRs), or tumor repressor protein p53/mouse double minute 2 homolog (MDM2), the characteristic frequency peak(s) could be observed with the hydrophobic scale for 20 amino acids as well as 4 nucleotides as the physicochemical parameter, but not successfully with the absolute electronegativity scale. This result implies that these two independent scales should be appropriately selected in various specific ligand–protein interactions, though the critical difference has to be determined.
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© 2004 The Pharmaceutical Society of Japan
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