We investigated the distributions of two native (Dolly Varden
Salvelinus malma malma and whitespotted char
Salvelinus leucomaenis leucomaenis) and one invasive (rainbow trout
Oncorhynchus mykiss) salmonid species using environmental DNA (eDNA) analysis in the centre of Hokkaido Island, Japan. The native species' populations are fragmented by damming and threatened by invasive species. Therefore, DNA real-time PCR assays specific to these three salmonids were used to investigate the effects of damming and invasive species on the two native salmonids.
Salvelinus malma populations exhibited separation due to damming. Additionally, they were not eliminated by invasive
O. mykiss but rather lived together at some sites.
Salvelinus leucomaenis populations occupied the lower reaches more than did
S. malma populations. We detected
S. leucomaenis and the invasive
O. mykiss population less frequently than expected. We were unable to clarify the seasonal movements of species, even during their reproductive phase, despite conducting eDNA surveys throughout the year, including during the coldest parts of winter. We hypothesise that damming may function both as a protective barrier against invasive species and as an impassable barrier preventing migration; however, the significance of these potential functions was not revealed in this study. From a long-term perspective, fragmentation may negatively affect the viability of native
Salvelinus populations. Conservation efforts for native Salvelinus species would be aided by additional studies using eDNA surveys, which can be effectively conducted even in mid-winter.
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