DNA polymorphisms among four accessions of
Alocasia odora and five accessions of
A. cucullata in Ishigaki Island, Japan were investigated by Random Amplified Polymorphic DNA (RAPD) and Inter Simple Sequence Repeat (ISSR) markers and sequence data of ITS nrDNA from similar accessions of
A. odora, two accessions of
A. cucullata and a sequence of
A. odora from DNA Data Bank (AF-469030) were analyzed. Clear and reproducible RAPD banding patterns were revealed by 11 of 20 OPA Primers and eight of 20 OPB Primers, whereas ISSR banding patterns were shown by 10 of 100 UBC Primers. The RAPD and ISSR data generated 195 and 54 polymorphic bands, respectively. According to Jaccard's coefficient, genetic similarity among accessions of
A. odora and
A. cucullata were varied from 4.67 to 44.12 for RAPD and from 6.90 to 80.65 for ISSR. Cluster analysis of RAPD and ISSR data by UPGMA showed two clusters. On RAPD analysis, cluster A consisted of
A. odora accession 1 and cluster B consisted of all other
A. odora and
A. cucullata accessions. Whereas on ISSR analysis, the accessions were separated based on the species. Analysis of 30 sequence data of those species showed that
A. odora and
A. cucullata could not be separated, even among the sequences within individual. Clearly, ITS nrDNA sequence data could not resolve intragenome and intergenome of
Alocasia odora and
A. cucullata. This study suggested that the genetic marker method is more appropriate to analyze population structure in
A. odora and
A. cucullata than ITS nrDNA sequence data analysis.
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