To identify similarities in morphological characteristics between the Jomon/Ainu and early to late historic inhabitants of the Tohoku region, we performed metric and nonmetric analyses of the cranial series of protohistoric Kofun from southern Tohoku and early modern Edo from northern Tohoku. The skulls of the eastern Japan Jomon, Hokkaido Ainu, and Kofun and Edo peoples in Kanto and northern Kyushu were used for comparison. Analyses based on Mahalanobis’ generalized distance (D
2) and discriminant analyses were performed, using 18 cranial measurements. Nonmetric analyses were based on Smith’s Mean Measure of Divergence (MMD), computed using 6 cranial nonmetric traits, which are noted to have few interobserver errors and to be effective for discriminating between Japanese subpopulations. In both approaches for applying D
2 and MMD, the Ainu exhibit the most significant similarity to the Jomon, followed by the southern Tohoku Kofun. A clear geographical cline in cranial metric and nonmetric traits: Kyushu→Kanto→Tohoku→Hokkaido (Ainu/Jomon), was observed in both cases of the Kofun and Edo periods. A similar geographical cline was also noted in the results of discriminant analyses. Such geographical clines have suggested that the Kofun period inhabitants in northern Tohoku, not covered by the present study, were closer to the Jomon/Ainu group than those in southern Tohoku. Since the morphological difference between the ancient Japanese in the Tohoku region (Emishi as described in ancient documents) and the Jomon/Ainu is clinal, disputes over “the racial identification of ancient Emishi” of whether they were Ainu or Japanese, do not appear to be significant.
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