The carotenoid metabolism enzyme zeaxanthin epoxidase (ZEP) is a key regulator of carotenoid accumulation in
Citrus fruit. The expression level of the gene encoding this enzyme,
ZEP, influences varietal differences in the conversion of zeaxanthin to violaxanthin during fruit development. To determine how this gene is regulated, we investigated the structure of its alleles and analyzed allele-specific
ZEP expression in heterozygous
Citrus fruit. Four independent genomic sequences were isolated from a BAC library of Satsuma mandarin (
Citrus unshiu Marc.). All
ZEP gene sequences in Satsuma mandarin consisted of 16 exons and 15 introns. Genetic analyses of hybrid populations and analyses of sequence variations identified that two of the sequences were alleles from the
ZEP-1/-2 locus, and others were from different locus/loci,
ZEP-3/-4, for which allelism has not been confirmed. The
ZEP-4 allele was expressed in young-stage fruit, but not in mature-stage fruit, while
ZEP-1/-2 alleles were expressed as fruit matured. Our results showed that the newly identified isoform,
ZEP-4, did not contribute to the accumulation of violaxanthin during fruit maturation. Expression levels of
ZEP-1/-2 alleles in the fruit of three heterozygous
Citrus cultivars were compared using allele-specific RT-PCR. Transcripts of
ZEP-1 alleles were more abundant than those of
ZEP-2 alleles in all three cultivars. Sequence diversity among the 5' UTRs of
ZEP alleles was also analyzed. The implications of sequence diversity with respect to diversity of the expression and phylogenetic relationships among
ZEP genes in
Citrus are discussed.
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