Conventional peptide synthesis involves multiple protection and deprotection steps, and typically relies on stoichiometric amounts of coupling reagents and additives. This makes the process cumbersome, and results in poor atom economy and hazardous waste generation. Therefore, direct peptide bond formation using unprotected amino acids is a promising alternative. However, this approach presents some challenges: 1) Solubility of unprotected amino acids in organic solvents; 2) Control of undesired side reactions; 3) Chemo-selective activation of the carboxylic acid group in the presence of an amine functionality; and 4) Epimerization. To address these challenges, we developed tris(2,2,2-trifluoroethoxy)silane [H-Si(OCH2CF3)3], a cost-effective and accessible coupling reagent. This single reagent efficiently synthesizes N-terminal free peptides from unprotected amino acids and amino acid tert-butyl esters, without the need for any additives. H-Si(OCH2CF3)3 enhances amino acid solubility through coordinating with both termini and plays a dual role, serving as a transient amine-protecting group and as a carboxylic acid activating or promoting reagent for peptide bond formation. This method is operationally simple and versatile, enabling the efficient synthesis of N-terminal free peptides from unprotected amino acids and amino acid tert-butyl esters, with good yields, high optical purity, and broad side-chain compatibility.
The development of
cost-effective, practical, and sustainable methods for peptide synthesis using
unprotected amino acids remains an important goal in modern synthetic organic
chemistry. In this study, the authors identified a single, inexpensive reagent,
tris(2,2,2-trifluoroethoxy)silane, which functions as an efficient coupling
agent for synthesizing N-terminal free peptides from unprotected amino acids
and amino acid tert-butyl esters, without requiring additional additives. The
reagent is easily prepared from trichlorosilane and 1,1,1-trifluoroethanol.
This approach demonstrates broad substrate applicability, enabling the
synthesis of diverse N-terminal free peptides in consistently high yields with
excellent optical purity.
We previously reported that AgI- and HgII-mediated primer extension reactions with a dT template are highly selective for dC and dT triphosphate incorporation, forming T-AgI-C and T-HgII-T base pairs, respectively. This study investigates the impact of 5-substitution of templated thymine and pH on Klenow fragment (KF) catalyzed metal-mediated primer extension reactions, as well as the thermal stability of DNA duplexes with a 5-substituted uracil derivative. The findings reveal that the selective base recognition of AgI and HgII ions, leading to T-AgI-C and T-HgII-T formation in metal-mediated primer extension, is likely governed by the absence of net charge in the resulting base pairs, the abstraction of thymine’s N3 imino proton by AgI, and the stability of the HgII-N3 bond. These findings may be useful for designing novel regulated replicating systems utilizing metal-mediated base pairs.
The impact of 5-substitution of templated
thymine and pH on metal-mediated primer extension reactions catalyzed by DNA
polymerase in the presence of Ag(I) and Hg(II) ions was investigated. The highly
selective base recognition of Ag(I) and Hg(II) ions, leading to the formation of
T-Ag(I)-C and T-Hg(II)-T, is likely controlled by the absence of net charge in
the resulting base pairs, the abstraction of the thymine N3 imino proton by Ag(I),
and the stability of the Hg(II)-N3 bond. These findings would be useful for
designing novel regulated replicating systems utilizing metal-mediated base
pairs.
Real-time detection and identification of modified cysteine sulfhydryl (Cys-SH) residues are important because supersulfidation (S-sulfhydrylation) alters protein function and thereby modulates the activity of biological systems. Although fluorescence probes for rapid, sensitive detection and biotin tag-switch methods for comprehensive labeling of modified residues at the proteome level have been developed, simultaneous detection and labeling have not been achieved in a single system. Herein, we describe dinitrobenzene-based fluorogenic probes with tunable electrophilicity, which react rapidly and selectively with highly nucleophilic supersulfides such as cysteine persulfide (Cys-SSH) and Na2S2 and simultaneously label Cys-SSH itself with a dinitrobenzene tag.
Supersulfides,
or reactive sulfur species (RSS), which include highly reactive and unstable
catenated sulfur species, have recently been identified. Since supersulfidation
on protein’s cysteine residue alters the function, real-time detection and
identification of modified residues are important for understanding their
biological significances. Based on this background, the authors have developed
a series of dinitrobenzene-based fluorogenic probes with tunable
electrophilicity, which react with highly nucleophilic supersulfides, such as
cysteine persulfide (Cys-SSH), and simultaneously label Cys-SSH residue on
proteins with a dinitrobenzene tag.
Efficient cytosolic delivery of functional proteins such as therapeutic antibodies remains a major challenge in drug development. In this study, we sought to optimize the cytosolic delivery peptide Mel-V8G12, a melittin derivative, through structure-guided design and functional screening of its amino acid substitutions. Among seven derivatives, VG-6, featuring A10L, T11E, and S18K substitutions demonstrated superior cytosolic delivery efficiency compared with the parental Mel-V8G12, while maintaining low cytotoxicity. Notably, VG-6 exhibited enhanced membrane-lytic activity toward neutral lipid membranes, yet did not increase cellular toxicity, suggesting a delivery mechanism distinct from conventional pH-responsive endosomolytic peptides. Mechanistic studies revealed that, in contrast to Mel-V8G12 which predominantly utilizes actin-mediated endocytosis, VG-6 additionally engages caveolae-mediated endocytosis, contributing to its enhanced cytosolic delivery. Furthermore, VG-6 enabled successful cytosolic delivery of functional Cre recombinase and immunoglobulin G (IgG), facilitating biological activity and subcellular targeting. These findings suggest that VG-6 is a promising tool for intracellular delivery of protein therapeutics via a unique membrane-interacting and endocytic pathway.
[Highlighted Paper selected by Editor-in-Chief]
The
authors present a rational design and comprehensive evaluation of a
melittin-derived peptide, VG-6, with enhanced cytosolic delivery efficiency.
Through structure-guided mutagenesis, physicochemical
analyses, molecular dynamics simulations, and cell biological studies, they
identified that VG-6 achieves efficient intracellular delivery of
macromolecules, including functional proteins and antibodies, via both
caveolae- and actin-dependent endocytic pathways, while maintaining low
cytotoxicity. Notably, the work challenges the conventional structure–function
paradigm of endosomolytic peptides, providing new design principles for
effective cytosolic delivery systems applicable to next-generation protein
therapeutics.
Structural transformation changes the activity of biological reactions. Neurotransmitter aralkylamines, such as phenethylamine, tyramine, dopamine, tryptamine, serotonin, and histamine, absorb aerial CO2, and heteronuclear multiple bond connectivity (HMBC) correlations between the carbon derived from CO2 and the α-hydrogen of the several amines were confirmed in the D2O solution. The isolation of methyl carbamate from phenethylamine and CO2 in water with TMSCHN2 also supported the formation of covalently bound carbamic acid in the amine aqueous solution containing CO2. Therefore, it is suggested that CO2 produced in the body would react with neurotransmitter amines to form covalently bound carbamic acid, which might affect biological reactions.
Structural changes associated with covalent bonds have a significant impact on physiological activity in body. If the reaction between neurotransmitter aralkylamines (R-NH2) and CO2 in body form covalent bonds (R-NH-CO2X), the resulting complexes may exhibit different physiological activity from the original amine. In this study, the authors investigated the structural changes of neurotransmitter aralkylamines CO2 in water. As a result, in NMR, the formation of covalent bond between aralkylamines and CO2 forming carbamates (R-NH-CO2X) was detected by HMBC correlation. The formation of covalent bond was also revealed by isolation of methyl carbamate from the methylation of amine under CO2 in water.
Design, Synthesis, and Biological Evaluation of Beauveriolide Analogues Bearing Photoreactive Amino Acids
Released on J-STAGE: July 01, 2016 | Volume 64 Issue 7 Pages 754-765
Yuichi Masuda, Kazumasa Aoyama, Masahito Yoshida, Keisuke Kobayashi, Taichi Ohshiro, Hiroshi Tomoda, Takayuki Doi
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