Bioscience, Biotechnology, and Biochemistry
Online ISSN : 1347-6947
Print ISSN : 0916-8451
63 巻, 10 号
選択された号の論文の37件中1~37を表示しています
Review
  • Tanetoshi KOYAMA
    1999 年63 巻10 号 p. 1671-1676
    発行日: 1999年
    公開日: 2005/03/10
    ジャーナル フリー
      Multiple alignments of primary structures of many kinds of prenyltransferases that participate in the most fundamental prenyl-chain backbone synthesizing process in isoprenoid biosynthesis showed seven conserved regions in the primary structures of (E)-prenyl diphosphate synthases. However, no information has been available about the structures of (Z)-prenyl diphosphate synthases until our recent isolation of the gene for the undecaprenyl diphosphate synthase of Micrococcus luteus B-P 26.
      The amino acid sequence of the (Z)-prenyl diphosphate synthase is totally different from those of (E)-prenyl chain elongating enzymes. Protein data base searches for sequences similar to that of the undecaprenyl diphosphate synthase yielded many unknown proteins which have not yet been characterized. Two of the proteins have recently been identified as the undecaprenyl diphosphate synthase of Escherichia coli and the dehydrodolichyl diphosphate synthase of Saccharomyces cerevisiae, indicating that there are three highly conserved regions in the primary structure of (Z)-prenyl chain elongating enzymes.
Organic Chemistry Regular Papers
  • Masahiro MIYASHITA, Miki AKAMATSU, Hideki UENO, Yoshiaki NAKAGAWA, Kei ...
    1999 年63 巻10 号 p. 1684-1690
    発行日: 1999年
    公開日: 2005/03/10
    ジャーナル フリー
      The activities of a series of RGD mimetics, which contained a variety of cationic structures, for the inhibition of platelet aggregation and fibrinogen-receptor binding were measured. The stability of the coulombic ion-pairing complex of the model compounds with the acetate anion as a model for the receptor was calculated in terms of the ionic interaction energy. The results suggest that stability is one of the significant factors which govern the inhibitory potency of fibrinogen-receptor binding. The distance between cationic and anionic groups might also affect the potency. A compound which contained an amidinophenyl structure as the cationic moiety showed exceptionally high inhibitory activity, suggesting that some other factors, in addition to coulombic interaction and the distance, affect the potency.
  • Kensuke NABETA, Masateru YAMAMOTO, Hiroyuki KOSHINO, Hiroki FUKUI, Yuk ...
    1999 年63 巻10 号 p. 1772-1776
    発行日: 1999年
    公開日: 2005/03/10
    ジャーナル フリー
      The absolute configurations of the rare sesquiterpenes, kelsoene and prespatane, were determined to be (1S, 2R,5S, 6S, 7R, 8R)-2,8-dimethyl-6-(1-methylethenyl)tricyclo[5.3.0.02,5] decane (IUPAC name) and (1R, 2S, 5R, 6R, 7R, 8S)-1,5-dimethyl-8-(1-methylethenyl) tricyclo-[5.3.0.02,6] decane, respectively, on the basis of the observed chemical shifts and NOEs in NOESY and NOEDS experiments after conversion with the chiral reagent, 2′-methoxy-1,1′-binaphthalene-2-carbohydroximoyl chloride (MBCC). The absolute configurations of kelsoene and prespatane thus determined suggest that initial cyclization of FPP from the si-face at C-10 to form a 10R-germacradienyl cation leads to kelsoene, while that from the re-face leads to prespatane via the 10S-germacradienyl cation.
  • Mariko SHIBATANI, Yasuyuki HASHIDOKO, Satoshi TAHARA
    1999 年63 巻10 号 p. 1777-1780
    発行日: 1999年
    公開日: 2005/03/10
    ジャーナル フリー
      Isohemigossypolone (1) and 2-O-methylisohemigossypolone (2), major fungitoxins of Pachira aquatica, were found to accumulate locally in the outer bark of the swollen trunk, whereas the inner bark and heartwood contained only a trace amount of them. From P. aquatica that was infected with a phytopathogenic bacterium, we detected significant amounts of 1 and 2 from browned inner tissues of the swollen trunk. According to a quantitative analysis by a gas-chromatograph, the concentration of 1 in the diseased inner tissues was calculated to be approximately 780 μg/g f.w., which was the same level as that in the outer bark of healthy individuals. These findings suggest that the inner tissues inducibly produced and accumulated antifungals 1 and 2 during infection events, as do many plants with phytoalexins. 11-Nor-2-O-methylisohemigossypolone (3), showing approximately equivalent fungitoxic activity to that of 1 and 2, was also isolated from the infected inner tissues. We screened pathogenic bacteria from the infected tissue, and isolated a rod-shaped bacterium that was tentatively identified as Pseudomonas sp. which promoted tissue-browning on sectioned disks of P. aquatica trunks.
Organic Chemistry Notes
Biochemistry & Molecular Biology Regular Papers
  • Kenichi HAMAYASU, Koki FUJITA, Kozo HARA, Hitoshi HASHIMOTO, Toshiko T ...
    1999 年63 巻10 号 p. 1677-1683
    発行日: 1999年
    公開日: 2005/03/10
    ジャーナル フリー
      Novel heterobranched cyclodextrins (CDs), N-acetylglucosaminyl-cyclodextrins (GlcNAc-CD), were synthesized from a mixture of GlcNAc and α, β, or γCD by the reverse reaction of N-acetylhexosaminidase from jack bean. Optimum pH and temperature for the production of GlcNAc-αCD by N-acetylhexosaminidase were pH 4.9 and 50-70°C, respectively. The maximum yield of GlcNAc-αCD was 17.5% (mol/mol) at the concentration of 1 M GlcNAc and 0.25 M αCD. The reverse reaction product, GlcNAc-αCD, was separated into two peaks by HPLC analysis on the ODS column. Their structures were identified as 6-O-β-D-N-acetylglucosaminyl-αCD and 2-O-β-D-N-acetylglucosaminyl-αCD by FAB-MS and NMR spectroscopies. N-Acetylhexosaminidase from jack bean also synthesized N-acetylgalactosaminyl-αCD from N-acetylgalactosamine and αCD.
  • Tang DAHAI, Shoji ANDO, Yozo TAKASAKI, Jutaro TADANO
    1999 年63 巻10 号 p. 1703-1707
    発行日: 1999年
    公開日: 2005/03/10
    ジャーナル フリー
      Site-directed mutagenesis by inverse PCR was done on the HindIII gene. Target residues to be mutated were chosen according to (i) the fact that a mutant obtained by sodium nitrite treatment showed almost no HindIII activity, where Asp-123 was replaced with Asn, and (ii) the model proposed by Stahl et al. (Stahl, F., Wende, W., Jeltsch, A. and Pingoud, A. Biol. Chem. 379, 467-473 (1998)). Sevenkinds of mutants were obtained by the PCR, and their enzymatic and biochemical properties were examined. Threemutants, P50S, D108L, and D123N, showed fairly low HindIII activity. On the other hand, the other four, P84Q, E86K, V106E, and K125N, retained the activity. In particular, E86K showed higher activity than the wild enzyme. This fact was confirmed when activities of the purified wild and E86K enzymes were assayed. These results coincided fairly well with data using E. coli strains that carry the respective mutant plasmids, on their resistance to phage T7 and on growth rate. We conclude that the PE motif at residues 50 and 51, and DXK motif at residues 108-110, are responsible for the enzymic reaction of HindIII.
  • Kunihiko MORIYOSHI, Takashi OHMOTO, Tatsuhiko OHE, Kiyofumi SAKAI
    1999 年63 巻10 号 p. 1708-1713
    発行日: 1999年
    公開日: 2005/03/10
    ジャーナル フリー
      An esterase catalyzing the hydrolysis of acetyl ester moieties in cellulose acetate was purified 1,110-fold to electrophoretic homogeneity from the culture supernatant of Neisseria sicca SB, which can assimilate cellulose acetate as the sole carbon and energy source. The purified enzyme was a monomeric protein with a molecular mass of 40 kDa and the isoelectric point was 5.3. The pH and temperature optima of the enzyme were 8.0-8.5 and 45°C. The enzyme catalyzed the hydrolysis of acetyl saccharides, p-nitrophenyl esters of short-chain fatty acids, and was slightly active toward aliphatic and aromatic esters. The Km and Vmax for cellulose acetate (degree of substitution, 0.88) and p-nitrophenyl acetate were 0.0162% (716 μM as acetyl content in the polymer) and 36.0 μM, and 66.8 and 39.1 μmol/min/mg, respectively. The enzyme was strongly inhibited by phenylmethylsulfonyl fluoride and diisopropyl fluorophosphate, which indicated that the enzyme was a serine esterase.
  • Shin-ichi KASHIWABARA, Sosaku OGAWA, Naoko MIYOSHI, Masayo ODA, Yuzuru ...
    1999 年63 巻10 号 p. 1736-1748
    発行日: 1999年
    公開日: 2005/03/10
    ジャーナル フリー
      The gene that coded for a cellular pullulanase of type I (α-dextrin 6-glucanohydrolase, EC 3.2.1.41) in Bacillus flavocaldarius KP1228 (FERM-P9542) cells growing at 51 to 82°C was expressed in Escherichia coli MV1184. The enzyme had a half-life of 10 min at 107°C. Purification of the enzyme and its characterization showed that the enzyme was identical with the native one. Its primary structure of 475 residues with a molecular weight of 53,856 deduced from the gene was 15-21% and 43% identical to the corresponding C-terminal regions in the sequences of 2 plant and 6 bacterial pullulanases of type I, and of Bacillus stearothermophilus TRS40 neoplullulanase, respectively.
      Sequence analysis showed that B. flavocaldarius pullulanase comprised 3 domains, i.e., one catalytic (β/α)8-barrel domain, one domain made of the region protruding from the barrel between the third β-strand and the third α-helix, and one β-stranded domain attached to the C-end of the barrel domain, but that the pullulanase lacked the β-stranded domain commonly found in addition to the 3 domains in the neopullulanase and all other pullulanases, and attached to the N-end of the barrel domain.
  • Keiji NAKAJIMA, Yoko OSHITA, Masahiko KAYA, Yasuyuki YAMADA, Takashi H ...
    1999 年63 巻10 号 p. 1756-1764
    発行日: 1999年
    公開日: 2005/03/10
    ジャーナル フリー
      In the biosynthesis of tropane alkaloids, two tropinone reductases (TRs) catalyze reduction of tropinone to different stereoisomers, tropine and pseudotropine. Two TRs from Hyoscyamus niger have 64% of identical amino acids and hence a common evolutionary origin. In this study, genomic clones of TRs were isolated from H. niger. Their sequence comparison showed that although they have the same exon/intron organization, sequence similarity was restricted to the coding regions. In H. niger transgenic hairy roots, both TR promoters activated transcription of the reporter genes in endodermis and pericycle of the roots. A quantitative reporter assay and a nuclear run-on experiment indicated that the two genes are transcribed at a similar rate. The results indicate that although different activity levels have been observed for the TR enzymes in the H. niger root, the TR genes per se conserve similar tissue-specific expression pattern and transcriptional rate.
  • Masae HORINOUCHI, Takako YOSHIDA, Hideaki NOJIRI, Hisakazu YAMANE, Tos ...
    1999 年63 巻10 号 p. 1765-1771
    発行日: 1999年
    公開日: 2005/03/10
    ジャーナル フリー
      In our previous study, the multicomponent monooxygenase DsoABCDEF in Acinetobacter sp. strain 20B was cloned based on its ability to oxidize dimethyl sulfide (DMS) to dimethyl sulfoxide (DMSO) in E. coli cells, which had high sequence similarity with phenol hydroxylase MopKLMNOP in Acinetobacter calcoaceticus NCIB8250, DmpKLMNOP in Pseudomonas sp. CF600 and some other multicomponent monooxygenases. In this study, DsoB, C, D, E, and F were found to be needed for DMS-oxidizing activity in polypeptide requirement experiments, while DsoA was not necessary for it. It was also found that complementation of the deletion mutants lacking DsoC or F with the corresponding Dmp polypeptides supported the DMS-oxidizing activity, while complementation of the deletion mutants lacking any of the oxygenase subunits (DsoB, D, or E) with the corresponding Dmp polypeptides reduced or nullified the activity.
Biochemistry & Molecular Biology Notes
Biochemistry & Molecular Biology Preliminary Communications
Food & Nutrition Science Regular Papers
Food & Nutrition Science Notes
Microbiology & Fermentation Technology Regular Papers
  • Il KWON, Keisuke EKINO, Masatoshi GOTO, Kensuke FURUKAWA
    1999 年63 巻10 号 p. 1714-1720
    発行日: 1999年
    公開日: 2005/03/10
    ジャーナル フリー
      Endoglucanase I (EGI) secreted from Trichoderma viride HK-75 has a unique transglycosylation activity. The genomic and cDNA clones encoding EGI (egl1) of T. viride HK-75 were isolated and characterized. The coding region of egl1, composed of 1392 bp, was found to encode a polypeptide of 464 amino acids that has extensive similarity (93.8%) with EGI of T. reesei. Expression of the egl1 gene in E. coli as a fusion protein (with N-terminal thioredoxin and C-terminal histidine tag) led to a large production of a nonglycosylated protein of 62.5 kDa. However, it formed an insoluble inclusion body. Upon denaturation with 8 M urea followed by dialysis and successive purification, the enzymatically active recombinant EGI (rEGI) was obtained at a level as high as 18.3 mg/l of 1,000 ml of culture. The rEGI had 67.8% activity for carboxymethyl cellulose (CMC), compared to native EGI (nEGI). The optimum pH and optimum temperature of rEGI were lower than those of nEGI by 0.5 and 5°C, respectively. The rEGI also had narrower CMCase ranges than nEGI in pH and temperature stabilities. However, the catalytic and transglycosylation abilities against cellotriose of rEGI were comparable to those of nEGI. These results suggest that the glycosylation is important for the stabilities of EGI but not critical for the essential enzymatic capacity.
  • Sheng-Xue XIE, Jun OGAWA, Sakayu SHIMIZU
    1999 年63 巻10 号 p. 1721-1729
    発行日: 1999年
    公開日: 2005/03/10
    ジャーナル フリー
      An NAD+-dependent alcohol dehydrogenase was purified to homogeneity from Nocardia fusca AKU 2123. The enzyme catalyzed (S)-specific oxidation of 3-pentyn-2-ol (PYOH), i.e., part of the stereoinversion reaction for the production of (R)-PYOH, which is a valuable chiral building block for pharmaceuticals, from the racemate. The enzyme used a broad variety of secondary alcohols including alkyl alcohols, alkenyl alcohols, acetylenic alcohols, and aromatic alcohols as substrates. The oxidation was (S)-isomer specific in every case. The Km and Vmax for (S)-PYOH and (S)-2-hexanol oxidation were 1.6 mM and 53 μmol/min/mg, and 0.33 mM and 130 μmol/min/mg, respectively. The enzyme also catalyzed stereoselective reduction of carbonyl compounds. (S)-2-Hexanol and ethyl (R)-4-chloro-3-hydroxybutanoate in high optical purity were produced from 2-hexanone and ethyl 4-chloro-3-oxobutanoate by the purified enzyme, respectively. The Km and Vmax for 2-hexanone reduction were 2.5 mM and 260 μmol/min/mg. The enzyme has a relative molecular mass of 150,000 and consists of four identical subunits. The NH2-terminal amino acid sequence of the enzyme shows similarity with those of the carbonyl reductase from Rhodococcus erythropolis and phenylacetaldehyde reductase from Corynebacterium sp.
Microbiology & Fermentation Technology Note
Microbiology & Fermentation Technology Preliminary Communication
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