RLGS is a technique to detect DNA polymorphism using restriction sites as landmarks. It identifies the landmarks through direct end-labeling, two-dimensional electrophoresis, and autoradiography, giving a profile with many spots to allow the scanning of numerous DNA loci. We successfully performed the technique on fungi using isolates of Colletotrichum acutatum and C. gloeosporioides in anamorphic Ascomycotina, Rhizopus oryzae in Zygomycotina, Phytophthora nicotianae in Mastigomycotina (or Oomycota), and Rhizoctonia solani in anamorphic Basidiomycotina. RLGS of total genomic DNA digested with three restriction enzymes, Not I, EcoR V and Mbo I, reproducibly gave specific profiles of ca. 400 to 1,600 spots for each isolate. A polymorphic spot appearing to reflect a genetic difference between the two Colletotrichum species was found in the profiles of the isolates. No other common spots were found in any combination of isolates of the two Colletotrichum species, and thus the other spots on the profiles were regarded as unique to each isolate. These results indicated that RLGS could be applied as a powerful fingerprinting technique based on genetic information from the whole genomic DNA, to search for useful DNA markers for taxonomic and genomic studies on many fungal species.
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