We established a simple method to identify
Bacillus subtilis natto strain KA-145 by PCR.
B. subtilis natto is indispensable as a starter strain for fermenting Japanese traditional food "natto".
B. subtilis natto strain KA-145 is a recent isolate with high nattokinase activity compared to the normal strain. Discrimination of the bacterial strains is important in controlling contamination of the strains. The IS
4Bsu1, a first insertion sequence found in
B. subtilis natto, was amplified by PCR, cloned and used for a probe in Southern hybridization. Six to eight copies of IS
4Bsu1 were observed in the strains examined and a 1.7kb
EcoRV fragment was identified as a marker for the strain KA-145. Inverse PCR technique was used to isolate a 0.3kb sequence adjacent to the IS
4Bsu1. Sequence analysis revealed that the IS
4Bsu1 sequence was inserted into the multidrug transporter gene,
bmr. A
bmr gene specific primer pair was constructed to identify the strain KA-145. The PCR based discrimination method is highly specific for detecting the insertion sequence in
bmr gene of the strain KA-145 and useful for identifying the strain.
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