We compared the performance of three DNA extraction methods using 12 processed wheat foods, e.g. noodles, bread, and confectionery items. Three commercial kits, DNeasy Plant Mini Kit, Genomic-tip 20/G, and
GM quicker 3, were each tested in three laboratories. Of the three methods, Genomic-tip 20/G produced the best results for DNA purity testing when applied to castella, and it was generally well-suited to all of the food types tested. However, all of the methods successfully extracted DNA from all the analyzed foods, and the DNA was suitable for PCR amplification using a wheat-specific marker. However, PCR amplification was not reproducible in some of the processed food samples when we applied a DNA marker for cultivar identification, regardless of the method used. The results show that, depending on the type of food being tested, PCR conditions need to be optimized slightly in order to identify a cultivar accurately.
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