Japanese Journal of Mycology
Online ISSN : 2424-1296
Print ISSN : 0029-0289
ISSN-L : 0029-0289
Volume 52, Issue 2
Displaying 1-7 of 7 articles from this issue
Obituary
Short communications
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  • Kei KAMINO
    2011Volume 52Issue 2 Article ID: jjom.H22-10
    Published: November 01, 2011
    Released on J-STAGE: March 30, 2018
    JOURNAL FREE ACCESS

    The bioethanol produced from lingo-cellulosic biomass relies substantially on microbial functions which may be difficult to understand due to the processes involved: the complex nature of the substrate and enzymes, numerous choices for the pre-treatment of biomass, and the interdisciplinary aspects of the subject. These complexities are summarized here. Microbial functions can be required for the saccharification, fermentation, and pre-treatment of biomass, the saccharification process almost completely relying on microbial enzymes. The use of a commercial enzyme based on Trichoderma sp. should be maximized to achieve both the optimum activity for lingo-cellulosic biomass degradation and reduced cost. Continuing investigation on the diversity of microbial enzyme systems will also identify future candidates beyond Trichoderma sp.

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  • Hideaki KOIKE
    2011Volume 52Issue 2 Article ID: jjom.H22-11
    Published: November 01, 2011
    Released on J-STAGE: March 30, 2018
    JOURNAL FREE ACCESS

    This article reviews basic concepts, current status, and the potential applications of genomics on mycology, along with providing brief introductions of currently available technologies for experimental and bioinformatics approaches. The development of methodologies of bioinformatics and functional genomics, such as transcriptome, proteome, and metabolome analyses, enables the genome-wide study of various genetic phenomena related to filamentous fungal cells. An increase in the speed of genome sequencing would increase the number of genera that can be studied by comparative genomic analysis. Data obtained by functional and comparative genomic analyses may explain phenomena associated with vast numbers of genes. Genomics can provide an effective functional analysis of vast numbers of genes with unknown functions. The advent of next-generation sequencers will facilitate fast and cost-effective genome sequencing leading to the deciphering of more genome sequences, thereby enhancing the effectiveness of functional and comparative genomics. In the near future, genomic analysis will be incorporated into various fields of mycology. This review is an introduction to the current status of potentially useful technologies and strategies that are available for genomic and proteomic applications in mycology.

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  • Gen OKADA
    2011Volume 52Issue 2 Article ID: jjom.H22-12
    Published: November 01, 2011
    Released on J-STAGE: March 30, 2018
    JOURNAL FREE ACCESS

    Among the important changes for fungi in the International Code of Nomenclature for algae, fungi, and plants (Melbourne Code) adopted at the 18th International Botanical Congress (IBC2011, Melbourne, July 2011), the drastic change from dual nomenclature to unified nomenclature for anamorphic fungi or fungi with a pleomorphic life cycle (Art. 59) was explained with a special focus.

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