X-ray Structure Analysis Online
Online ISSN : 1883-3578
ISSN-L : 1883-3578
Volume 33
Displaying 1-25 of 25 articles from this issue
Part 1
  • Masahiro MIKURIYA, Iyo MATSUSHIMA, Yukiko HANAMOTO, Daisuke YOSHIOKA
    2017 Volume 33 Pages 1-2
    Published: January 10, 2017
    Released on J-STAGE: January 10, 2017
    JOURNAL FREE ACCESS
    Supplementary material

    The title compound, N,N′-bis(2-hydroxy-3,5-dimethylbenzyl)-N,N′-dimethyl-1,2-ethanediamine, was synthesized and the crystal structure was determined by the single-crystal X-ray diffraction method at 293 K. It crystallizes in the monoclinic space group C2/c with a = 17.319(3)Å, b = 9.7041(17)Å, c = 13.352(2)Å, β = 114.032(3)°, V = 2049.4(6)Å3, Dx = 1.155 g/cm3, and Z = 4. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0524 and 0.1629, respectively, for all 2432 independent reflections. The molecule is twisted at the ethylendiamine moiety of the ligand with a dihedral angle between the two phenolate planes of 13.58(7)°.

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  • Uwaisulqarni M. OSMAN, Azieda Syafika N. FARIZAL, Suhana ARSHAD, Maisa ...
    2017 Volume 33 Pages 3-4
    Published: January 10, 2017
    Released on J-STAGE: January 10, 2017
    JOURNAL FREE ACCESS
    Supplementary material

    The compound of (Z)-1-[4-(trifluoromethyl)benzylidene]thiosemicarbazide crystallizes in the triclinic space group P1 and Z = 2 with cell parameters a = 7.0109(8)Å, b = 11.7862(13)Å, c = 14.9095(16)Å, α = 111.814(2)°, β = 91.720(2)°, γ = 101.036(2)° and V = 1115.7(2)Å3. The crystal structure was solved by direct methods and refined by full-matrix least-squares on F2 to final values of R1 = 0.0438 and wR2 = 0.1078. In the crystal, each molecule is linked by intermolecular N–H···S hydrogen bonds.

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Part 2
  • Jongwan LIM, Yunseok SHIN, Junhee HAN, Sanghoon RYU, Ryoji MITSUHASHI, ...
    2017 Volume 33 Pages 5-7
    Published: February 10, 2017
    Released on J-STAGE: February 10, 2017
    JOURNAL FREE ACCESS
    Supplementary material

    A dinuclear nickel(II) complex with N,N′-disalicylidene-2,2′-(ethylenedioxy)bis(ethylamine) (H2dee), [Ni2(dee)2(μ-H2O)]·2EtOH (1), was synthesized. The crystal structure was determined by the single-crystal X-ray diffraction method at 90 K. The complex crystallizes in the monoclinic space group C2/c with a = 18.321(8), b = 13.543(6), c = 18.649(9)Å, β = 108.372(8)°, V = 4391(3)Å3, Dcalcd = 1.416 g/cm3, Z = 4. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0347 and 0.0736, respectively, for all 5014 independent reflections. The complex is composed of a dinuclear molecule with di-μ-phenolato-bridges of dee2− and the μ-aqua-bridge, and crystal ethanol molecules. The electronic spectral feature is consistent with the octahedral geometry of the nickel(II) ions.

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  • Tomoyuki TAKEYAMA, Yuki NAKAJIMA, Kosuke KATAGIRI, Satoshi IWATSUKI
    2017 Volume 33 Pages 9-10
    Published: February 10, 2017
    Released on J-STAGE: February 10, 2017
    JOURNAL FREE ACCESS
    Supplementary material

    A methanesulfonate salt of 3-(N-methyl)quinolinium boronic acid, [3-(N-Me)QnB(OH)2]CH3SO3, was structurally determined by X-ray analysis. The boronic acid salt was crystalized as: P21/c, a = 8.57927(17), b = 6.99494(16), c = 21.0760(4)Å, β = 99.4787(19)°, Z = 4, V = 1247.53(4)Å3. In the single crystal, hydrogen-bonded 1D-array structures of asymmetric cation-anion units were observed.

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Part 3
Part 4
  • Maral ARIANI, Mehrdad POURAYOUBI, Michal DUŠEK, Banafsheh VAHDANI ALVI ...
    2017 Volume 33 Pages 17-19
    Published: April 10, 2017
    Released on J-STAGE: April 10, 2017
    JOURNAL FREE ACCESS
    Supplementary material

    The crystal structure of CCl3C(O)NHP(O)[(R)-(+)-NHCH(CH3)(C6H5)]2·0.25H2O has been determined; it belongs to the chiral space group P1. In all four phosphoric triamide molecules of the asymmetric unit, the P atom has a distorted tetrahedral [NCP]P(O)[NP][NP] configuration where two angles, O=P–NP, are the largest ones at the P atom, while the NP–P–NP angle is the smallest one (NCP and NP denote the nitrogen atoms of the C(O)NHP(O) part and the two other nitrogen atoms bonded to phosphorus, respectively). In the crystal structure, two symmetry-independent one-dimensional chains extended along the b axis can be distinguished, each composed of alternating two symmetry independent phosphoric triamide molecules connected through N–H···O interactions. The chains are interconnected through hydrogen bonds of water molecules, and the resulting assembly is a ribbon running along the b axis.

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  • Jongwan LIM, Yunseok SHIN, Sanghoon RYU, Ryoji MITSUHASHI, Masataka OM ...
    2017 Volume 33 Pages 21-23
    Published: April 10, 2017
    Released on J-STAGE: April 10, 2017
    JOURNAL FREE ACCESS
    Supplementary material

    The di-μ-phenolato-μ-methanol-bridged dinuclear nickel(II) complex with N,N′-disalicylidene-2,2′-(ethylenedioxy)bis(ethylamine) (H2dee), [Ni2(dee)2(μ-CH3OH)]·2CH3OH, was synthesized. The crystal structure was determined by the single-crystal X-ray diffraction method at 90 K. The complex crystallizes in the monoclinic space group Cc with a = 18.157(2), b = 13.1691(17), c = 18.880(3)Å, β = 110.483(2)°, V = 4229.0(10)Å3, Dcalcd = 1.449 g/cm3, Z = 4. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0532 and 0.1455, respectively, for all 7392 independent reflections. The temperature dependence of the magnetic susceptibility showed a ferromagnetic interaction between the two nickel(II) ions (g = 2.23, J = 6.50 cm−1, D = 8.96 cm−1, and Nα = 697 × 10−6 cm3 mol−1 or g = 2.21, J = 7.27 cm−1, D = –6.88 cm−1, and Nα = 765 × 10−6 cm3 mol−1).

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Part 5
  • Yuki IDE, Yuya YAMADA, Shigeki MORI, Takahisa IKEUE
    2017 Volume 33 Pages 25-27
    Published: May 10, 2017
    Released on J-STAGE: May 10, 2017
    JOURNAL FREE ACCESS
    Supplementary material

    The title complex of a six-coordinated (2,3,7,8,12,13,17,18-octaethylporphyrinato)iron(III) complex with two 4-methylpyridine N-oxides, [Fe(OEP)(4-MePyNO)2]BF4 (BF4: tetrafluoroborate), was isolated, and the crystal structure was determined by the single-crystal X-ray diffraction method at 100(2)K. It crystallizes in the triclinic space group P-1 with a = 7.9064(2)Å, b = 13.7091(4)Å, c = 20.7535(6)Å, α = 90.870(2)°, β = 92.579(2)°, γ = 93.419(2)°V = 2242.83(11)Å3, Dx = 1.323 g/cm3, and Z = 2. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0517 and 0.1167, respectively, for all 10829 independent reflections. The average Fe–N and Fe–O distances are 2.045(2)Å and 2.093(1)Å. The porphyrin ring is a perfectly planar structure. We will determine the magnetic behaviors by SQUID and ESR measurements.

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  • Hiroshi SAKIYAMA, Misaki ICHI, Ryoji MITSUHASHI, Masahiro MIKURIYA
    2017 Volume 33 Pages 29-30
    Published: May 10, 2017
    Released on J-STAGE: May 10, 2017
    JOURNAL FREE ACCESS
    Supplementary material

    A tetracoordinate organoboron coordination compound dimethylformamide-triphenylborane complex (DMF-BPh3) was prepared, and characterized by single-crystal X-ray method. The compound crystallized in the orthorhombic space group Pna21 and Z = 4 with cell parameters a = 16.6818(12)Å, b = 11.5428(8)Å, c = 9.2234(6)Å, V = 1776.0(2)Å3. The R1 [I > 2σ(I)] and wR2 (all data) values were 0.042 and 0.1020, respectively, for all 4299 independent reflections. Three phenyl groups and one dimethylformamide (DMF) bound to the central boron atom, forming a tetrahedral geometry. The B–O(DMF) distance [1.601(3)Å] was found to be shorter than the B–C distances [1.616(3) – 1.626(3)Å].

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Part 6
  • Masahiro MIKURIYA, Masahiro TAKEUCHI, Daisuke YOSHIOKA
    2017 Volume 33 Pages 31-33
    Published: June 10, 2017
    Released on J-STAGE: June 10, 2017
    JOURNAL FREE ACCESS
    Supplementary material

    A tetranuclear nickel(II) complex with 1-acetylacetoneimine-3-salicylideneamino-2-propanol (H3asp), [Ni4(asp)2(CH3O)2(CH3OH)2], was synthesized, and the crystal structure was determined by the single-crystal X-ray diffraction method at 293 K. The complex crystallizes in the monoclinic space group P21/c with a = 12.154(3)Å, b = 11.821(3)Å, c = 15.945(4)Å, β = 112.214(3)°, V = 2120.9(9)Å3, Dx = 1.421 g/cm3, and Z = 2. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0363 and 0.1022, respectively, for all 5069 independent reflections. The complex has a centrosymmetric di-μ3-methoxido-di-μ-alkoxido-di-μ-phenoxido-bridged tetranuclear nickel(II) structure with a defective double-cubane core, having two octahedral Ni and two five-coordinate Ni atoms with two unsymmetrical Schiff-base ligands and two methanol molecules. The temperature dependence of the magnetic susceptibility showed a ferromagnetic interaction between the nickel(II) ions. The spectral and magnetic properties are consistent with the crystal structure.

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  • Takashi FUJIMOTO, Akihito YAMANO, Toshiyuku NISHIO, Yohei SAKAKI, Mits ...
    2017 Volume 33 Pages 35-36
    Published: June 10, 2017
    Released on J-STAGE: June 10, 2017
    JOURNAL FREE ACCESS
    Supplementary material

    A crystal of trisaccharide, β-D-galactopyranosyl-(1↔6)-β-D-fructofuranosyl-(2↔1)-2-acetamido-2-deoxy-α-D-glucopyranoside, was prepared and its crystal structure was determined at the orthorhombic space group P212121 with cell parameters a = 8.7221(2), b = 9.6970(3), c = 31.8548(10)Å, Z = 4. A bent structure was observed, where β-D-galactopyranoside and 2-acetamido-2-deoxy-α-D-glucopyranoside rings made close contacts.

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Part 7
Part 8
  • Masahiro MIKURIYA, Masahiro TAKEUCHI, Daisuke YOSHIOKA, Ryoji MITSUHAS ...
    2017 Volume 33 Pages 45-47
    Published: August 10, 2017
    Released on J-STAGE: August 10, 2017
    JOURNAL FREE ACCESS
    Supplementary material

    A nickel(II) complex with α-(2-hydroxy-3-salicylideneaminopropyl)iminopropionic acid (H3hsaip), [Ni(Hhsaip)], was isolated, and the crystal structure was determined by the single-crystal X-ray diffraction method at 293 K. The complex crystallizes in the monoclinic space group P21/c with a = 9.364(3)Å, b = 17.725(5)Å, c = 7.753(2)Å, β = 105.004(5)°, V = 1242.8(6)Å3, Dx = 1.715 g/cm3, and Z = 4. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0601 and 0.1444, respectively, for all 2950 independent reflections. The complex is a mononuclear nickel(II) complex with Hhsaip, which was derived from the degradation of 1-acetylacetoneimine-3-salicylideneamino-2-propanol, having a square-planar geometry. In the crystal, the nickel atom is close to the neighboring molecule’s one with a distance of 3.265(1)Å. A DFT calculation suggested that the S = 0 state without metal–metal bonding is more stable compared with an S = 1 state with the metal–metal bonding.

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  • Yuki IDE, Haruka HOSODA, Hiroki ISHIMAE, Shigeki MORI, Takahisa IKEUE
    2017 Volume 33 Pages 49-51
    Published: August 10, 2017
    Released on J-STAGE: August 10, 2017
    JOURNAL FREE ACCESS
    Supplementary material

    The title complex of a six-coordinated [5,10,15,20-tetrakis(2,4,6-trimethylphenyl)-porphyrinato-k4N]iron(III) complex with two 3,5-dimethylpyridine N-oxides, [Fe(TMP)(3,5-Me2PyNO)2]ClO4 (ClO4: perchlorate), was prepared, and characterized by a single-crystal X-ray diffraction method at 100(2)K. The title complex crystallizes in the triclinic space group P-1 with a = 15.2889(4)Å, b = 15.8587(4)Å, c = 16.2403(5)Å, α = 84.596(2)°, β = 63.769(3)°, γ = 84.162(2)°, V = 3508.49(19)Å3, Dx = 1.345 g/cm3, and Z = 2. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0628 and 0.1517, respectively, for all 16923 independent reflections. The average Fe–N and Fe–O distances are 2.041(3)Å and 2.033(3)Å. The porphyrin ring is a completely planar structure. We will determine the magnetic behaviors by SQUID and ESR measurements.

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Part 9
  • Stefan DOCHEV, Alexander ROLLER, Miljan MILUNOVIC, Ilia MANOLOV
    2017 Volume 33 Pages 53-55
    Published: September 10, 2017
    Released on J-STAGE: September 10, 2017
    JOURNAL FREE ACCESS
    Supplementary material

    The structure of 4-(bis(4-hydroxy-2-oxo-2H-chromen-3-yl)methyl)benzoic acid (1) was determined by X-ray crystallography. Compound 1 · THF crystallizes in the monoclinic system, space group P21/n (#14) with cell parameters a = 10.676(2)Å, b = 10.017(2)Å, c = 24.438(6)Å, β = 100.890(10)°, V = 2566.4(10)Å3 and Z = 4. The molecular configuration/conformation is stabilized by two intramolecular hydrogen bonds formed between the carbonyl group of one 4-hydroxycoumarin unit and the hydroxyl group of the second one and the opposite (C=O···H–O).

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  • Uwaisulqarni M. OSMAN, M. Ibrahim M. TAHIR, Karen A. CROUSE, Thahira B ...
    2017 Volume 33 Pages 57-58
    Published: September 10, 2017
    Released on J-STAGE: September 10, 2017
    JOURNAL FREE ACCESS
    Supplementary material

    The title compound, C9H12N2S3, was obtained from a condensation reaction between S-methyldithiocarbazate and 1-(2-thienyl)-1-propane. The compound crystallized in the monoclinic space group P21/n with cell parameters a = 10.178(3), b = 13.357(4), c = 8.845(3)Å, β =98.613(5)°, Z = 4 and V = 1188.9(6)Å3. The compound was nearly planar with intermolecular N–H···S hydrogen bonding observed in the crystal lattice.

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  • Masahiro MIKURIYA, Masashi HARA, Daisuke YOSHIOKA
    2017 Volume 33 Pages 59-61
    Published: September 10, 2017
    Released on J-STAGE: September 10, 2017
    JOURNAL FREE ACCESS
    Supplementary material

    A nickel(II) complex with 1,3-bis(pyrrole-2-methylideneamino)-2-propanol (H3bpmp), [Ni(Hbpmp)]·0.5CH3OH, was prepared, and the crystal structure was determined by the single-crystal X-ray diffraction method at 293 K. The complex crystallizes in the triclinic space group P1 with a = 9.6947(12)Å, b = 12.0269(15)Å, c = 13.2626(18)Å, α = 94.036(2)°, β = 108.801(2)°, γ = 104.820(2)°, V = 1395.3(3)Å3, Dx = 1.509 g/cm3, and Z = 4. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0401 and 0.0955, respectively, for all 6384 independent reflections. The complex is a mononuclear nickel(II) complex with Hbpmp, having a square-planar geometry. The spectral feature is consistent with the crystal structure.

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Part 10
Part 11
  • Masahiro MIKURIYA, Masashi HARA, Daisuke YOSHIOKA, Ryoji MITSUHASHI
    2017 Volume 33 Pages 67-69
    Published: October 10, 2017
    Released on J-STAGE: November 10, 2017
    JOURNAL FREE ACCESS
    Supplementary material

    A copper(II) complex with 1,3-bis(pyrrole-2-methylideneamino)-2-propanol (H3bpmp), [Cu(Hbpmp)]·0.5C2H5OH, was prepared, and the crystal structure at 293 K was elucidated by the single-crystal X-ray diffraction method. The complex crystallized in the monolinic space group C2/c with a = 17.975(2)Å, b = 18.894(2)Å, c = 9.2081(11)Å, β = 113.728(2)°, V = 2863.0(6)Å3, Dm = 1.48 g/cm3, Dc = 1.526 g/cm3, and Z = 8. The R1 [I > 2σ(I)] and wR2 (all data) values are 0.0320 and 0.0991, respectively, for all 3378 independent reflections. The complex is essentially a square-planar copper(II) complex with partially deprotonated Hbpmp2−; this mononuclear unit is loosely connected by the axial semi-coordination of the alcohol group of the Hbpmp2− ligand of the neighboring mononuclear unit to form a dinuclear assembly. The temperature dependence of the magnetic susceptibility (4.5 – 300 K) follows the Curie–Weiss law with θ = –1.2 K, showing a weak antiferromagnetic interaction between the copper(II) ions, consistent with the crystal structure.

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  • Kan UEJI, Satsuki SHINOZAKI, Kazuo MIYAMURA
    2017 Volume 33 Pages 71-72
    Published: October 10, 2017
    Released on J-STAGE: November 10, 2017
    JOURNAL FREE ACCESS
    Supplementary material

    The structure of the bis[bis(p-methoxyphenyl)glyoximato]nickel(II) complex was determined by X-ray crystallography. The symmetry operation (–x+1, –y, –z+0.5) generates the whole molecule. The compound crystallizes in a monoclinic system, which was characterized as follows: C2/c, a = 17.6548(12), b = 19.0788(13), c = 9.2011(9)Å, β = 103.547(2)°, Z = 4, V = 3013.0(4)Å3. The crystal structure was solved using a dual-space algorithm and refined by a full-matrix least-squares method on F2 to final values of R1 = 0.0683 and wR2 = 0.1454. The para-methoxy group substitution brings about a molecular cuboid stemming from Ni(II)···π contact and moderate hydrogen bonding, instead of Ni–Ni interactions.

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Part 12
  • Shahrul Nizam AHMAD, Hadariah BAHRON, Amalina M. TAJUDDIN, M. Sukeri M ...
    2017 Volume 33 Pages 73-74
    Published: December 10, 2017
    Released on J-STAGE: December 10, 2017
    JOURNAL FREE ACCESS
    Supplementary material

    The structure of 2,2′-(((2,2-dimethylpropane-1,3-diyl)bis(azanylylidene))bis(methanylylidene))bis(4-methoxyphenol)palladium(II) was determined by X-ray crystallography analysis. It crystallizes in the space group P21/n, with cell parameter a = 12.5115(7)Å, b = 10.5337(6)Å, c = 15.0080(9)Å, β = 94.0547(19)°, Z = 4, and V = 1973.0(2)Å3. The crystal structure was solved by direct methods and refined by full-matrix least-squares on F2 to final values of R1 = 0.0415 and wR2 = 0.1251. The Schiff-base ligand was found to coordinate to the palladium(II) through tetradentate ONNO atoms forming a slightly distorted square-planar complex. Two intermolecular hydrogen bonds, C–H···O, stabilized two molecules forming dimers.

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  • Hiroshi SAKIYAMA, Saki TAKAHATA, Naoki KASHIMOTO, Ryoji MITSUHASHI, Ma ...
    2017 Volume 33 Pages 75-76
    Published: December 10, 2017
    Released on J-STAGE: December 10, 2017
    JOURNAL FREE ACCESS
    Supplementary material

    A dinuclar magnesium(II) complex, [Mg2(sym-hcp)2](BPh4)2·2acetone·2H2O, was synthesized with a dinucleating ligand, 4-chloro-2,6-bis[(2-hydroxyethyl)methylaminomethyl]phenolate [(sym-hcp)], and characterized by a single-crystal X-ray method. The compound crystallized in the monoclinic space group C2/c and Z = 4 with cell parameters a = 22.7667(13)Å, b = 19.1628(11)Å, c = 17.3218(10)Å, β = 96.1500(10)°, V = 7513.6(7)Å3. The R1 [I > 2σ(I)] and wR2 (all data) values were 0.0418 and 0.1023, respectively, for all 8618 independent reflections. The analysis revealed a bis-μ-phenolato-dimagnesium(II) core structure containing two distorted octahedral magnesium(II) ions.

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